New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 604803	47 (1.110)	3 (0.070)	3/246	NT	6.6%	coding (116/969 nt)	thiL	thiamin monophosphate kinase
	?	NC_002947	= 604838	40 (0.990)					coding (151/969 nt)	thiL	thiamin monophosphate kinase

AGTTCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACCCTGCCTGACGTTGGCCCT  >  NC_002947/604695‑604978                                                                                                                                                |                                                                                                                                             aggtCGAGCTGAGCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGAGGCGCTGGGTATCGGCGACGACGGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCggg                                                                                                                                         <  5:7115/146‑1 (MQ=255)  gTTCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccgggg                                                                                                                                        <  4:112961‑M2/149‑7 (MQ=255)   ttCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGt                                                                                                                                       <  1:173144/149‑1 (MQ=255)   ttCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGt                                                                                                                                       >  1:259646/1‑149 (MQ=255)   ttCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGt                                                                                                                                       <  2:29421/149‑1 (MQ=255)      gAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGtac                                                                                                                                     >  2:253426/1‑146 (MQ=255)            aTCAACCATTACTTCGCCGCAGAGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCTACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTc                                                                                                                               <  4:49458/148‑1 (MQ=255)             tgacacATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGATGGCGTGGCGCTGTGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCct                                                                                                                             <  7:223534/144‑1 (MQ=255)             tCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCct                                                                                                                             >  3:146246/1‑149 (MQ=255)               aaCCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCctg                                                                                                                            <  6:217260/148‑1 (MQ=255)                 ccATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCctgctg                                                                                                                         >  5:243456/1‑149 (MQ=255)                  cATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccg                                                                                                                                           <  7:62877‑M2/130‑4 (MQ=255)                  cATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccg                                                                                                                                           >  8:62877‑M2/1‑127 (MQ=255)                    ttACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGttt                                                                                                                      >  3:213727/1‑149 (MQ=255)                        ttCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccg                                                                                                                                           <  5:189073‑M2/124‑4 (MQ=255)                        ttCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccg                                                                                                                                           >  6:189073‑M2/1‑121 (MQ=255)                                      cTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTg                                                                                                    <  1:162923/149‑1 (MQ=255)                                           cgcAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCTCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGGCCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAg                                                                                               >  6:149456/1‑149 (MQ=255)                                              aGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTc                                                                                                                               >  5:89676/1‑114 (MQ=255)                                              aGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTc                                                                                                                               <  6:89676/114‑1 (MQ=255)                                                  cggcgAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGcgttcgt                                                                                        <  2:259646/149‑1 (MQ=255)                                                     cgAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTgg                                                                                     <  6:243456/149‑1 (MQ=255)                                                     cgAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTgg                                                                                     <  4:214348/149‑1 (MQ=255)                                                            gTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTggc                                                                              <  4:213727/149‑1 (MQ=255)                                                                 gcTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCa                                                                         <  5:149456/149‑1 (MQ=255)                                                                  cTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGc                                                                                              >  7:169657/1‑127 (MQ=255)                                                                  cTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGc                                                                                              <  8:169657/127‑1 (MQ=255)                                                                       tATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGAcc                                                                   >  6:227055/1‑149 (MQ=255)                                                                         tCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCt                                                                  <  1:177472/148‑1 (MQ=255)                                                                         tCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTg                                                                 >  1:128008/1‑149 (MQ=255)                                                                                 gacTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGAAATTTCCTGATGTTTGAGATCCGTTGGTGATTGGCAAGCGTTGGTTGGGTGTGGCGGCAAGTGACAGGGCAGcaag                                                         >  8:165886/1‑146 (MQ=255)                                                                                    tGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGCCCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATggg                                                      >  6:237775/1‑149 (MQ=255)                                                                                    tGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGc                                                               >  4:33447/1‑140 (MQ=255)                                                                                    tGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGc                                                               <  3:33447/140‑1 (MQ=255)                                                                                    tGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATggg                                                      >  7:69453/1‑149 (MQ=255)                                                                                    tGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGATGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATggg                                                      >  2:151462/1‑149 (MQ=255)                                                                                      cgcCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATggg                                                      <  8:69453/147‑1 (MQ=255)                                                                                         ccTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGa                                                 >  2:65523/1‑149 (MQ=255)                                                                                            gctgGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCctg                                                                                                                            <  7:31579/71‑1 (MQ=255)                                                                                            gctgGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCctg                                                                                                                            >  8:31579/1‑71 (MQ=255)                                                                                                 aCCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATc                                         <  1:151462/149‑1 (MQ=255)                                                                                                 aCCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCATTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATc                                         <  2:230784/149‑1 (MQ=255)                                                                                                    ttCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccggggggaaggtccagcagggcgcagtcgtcgccgatacccagcgccacgccctcgccgccctgcgcacagggcgctgcggcgaagtaatggttgatcagctc                                      <  7:21170‑M2/149‑105 (MQ=255)                                                                                                    gtCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTCGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGc                                      <  1:42092/148‑1 (MQ=255)                                                                                                          ccGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccggggggaaggtccagcagggcgcagtcgtcgccgatacccagcgccacgccctcgccgccctgcgcacagggcgctgcggcgaagtaatggt                                                <  7:46918‑M2/133‑95 (MQ=255)                                                                                                          ccGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGccggggggaaggtccagcagggcgcagtcgtcgccgatacccagcgccacgccctcgccgccctgcgcacagggcgctgcggcgaagtaatggt                                                >  8:46918‑M2/1‑39 (MQ=255)                                                                                                                     cTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGAc                     <  2:128008/149‑1 (MQ=255)                                                                                                                      tGGGGGTGTCGACCGTCACCCGTGTGGCCGGGGTTCACTTTTCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGAcc                    <  7:165886/149‑1 (MQ=255)                                                                                                                        gCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGTTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGAccc                   <  4:146246/148‑1 (MQ=255)                                                                                                                        gCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGAccc                   <  1:27769/148‑1 (MQ=255)                                                                                                                        agggTGTCGGTCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACcct                  >  8:179231/3‑149 (MQ=255)                                                                                                                                gaccgacACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACCCTGCCTGACg          >  1:88065/1‑149 (MQ=255)                                                                                                                                         ccTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACCCTGCCTGACGTTGGCCCt  >  1:95811/1‑148 (MQ=255)                                                                                                                                                |                                                                                                                                             AGTTCGAGCTGATCAACCATTACTTCGCCGCAGCGCCCTGTGCGCAGGGCGGCGAGGGCGTGGCGCTGGGTATCGGCGACGACTGCGCCCTGCTGGACCTTCCCCCCGGTGAGCAACTGGCGGTGTCGACCGACACCCTGGTCGCCGGGGTGCACTTTCCTGCTGTTTGCGATCCGTTGCTGCTTGGCCAGCGTTCGTTGGCTGTGGCGGCCAGTGACCTGGCAGCCATGGGCGCGACTGCAATCGGCTTCACCCTCGCACTGACCCTGCCTGACGTTGGCCCT  >  NC_002947/604695‑604978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.