New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	653210 =	67 (1.590)	4 (0.100)	4/248	NT	5.9%	coding (1533/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	653244 =	63 (1.550)					coding (1499/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL

CTGGTCGATGAAGTGCAAGGCAACGCCCGCATGATCGAACAATTGGCGGAAGAGTCGGCCACCATTGGCGGGGTACTGACGGTGATCCGCGCGATTGCCGAGCAGACCAACCTGCTGGCACTGAATGCCGCGATCGAAGCGGCCCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/653359‑653210 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTGGCCGACTCTTCCGCCAATTGTTCGATCATGCGGGCGTTGCCTTGCACTTCATCGACCAGCTCACGCAAGCCCGACAGGCTCTGGCC  >  NC_002947/653244‑653386                                                                                                                                                                                                                                                                                                       CTGGTCGATGAAGTGCAAGGCAACGCCCGCATGATCGAACAATTGGCGGAAGAGTCGGCCACCATTGGCGGGGTACTGACGGTGATCCGCGCGATTGCCGAGCAGACCAACCTGCTGGCACTGAATGCCGCGATCGAAGCGGCCCGTGC                                                                                                                                                  <  1:9084/149‑1                                                                                                                 TGCTGGCACTGAATGCCGCGATCGAAGCGGCCCGTGCCAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTGGCCGACTCTTCCGCCAATT                                                                     >  3:38654/1‑114                                                                                                                 TGCTGGCACTGAATGCCGCGATCGAAGCGGCCCGTGCCAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTGGCCGACTCTTCCGCCAATT                                                                     <  4:38654/114‑1                                                                                                                          TGAATGCCGCGATCGAAGCGGCCCGTGCCAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTG                                                                                        <  5:165293/86‑1                                                                                                                          TGAATGCCGCGATCGAAGCGGCCCGTGCCAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTG                                                                                        >  6:165293/1‑86                                                                                                                                                  GTGCCAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTGGCCGACTCTTCCGCCAATTGTTCGATCATGCGGGCGTTGCCTTGCACTTCATCGACCAGCTCACGCAAGCCCGACAGGCTCTGGCC  >  3:262797/1‑148                                                                                                                                                     CCAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTGGCCGACTCTTCCGCCAATTGTTCGATCATGCGGGCGTTGCCTTGCACTTCATCGACCAGCTCACGCAA                    <  3:137891/127‑1                                                                                                                                                     CCAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTGGCCGACTCTTCCGCCAATTGTTCGATCATGCGGGCGTTGCCTTGCACTTCATCGACCAGCTCACGCAA                    >  4:137891/1‑127                                                                                                                                                                                                                                                                                                       CTGGTCGATGAAGTGCAAGGCAACGCCCGCATGATCGAACAATTGGCGGAAGAGTCGGCCACCATTGGCGGGGTACTGACGGTGATCCGCGCGATTGCCGAGCAGACCAACCTGCTGGCACTGAATGCCGCGATCGAAGCGGCCCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/653359‑653210 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccAGCAGGTTGGTCTGCTCGGCAATCGCGCGGATCACCGTCAGTACCCCGCCAATGGTGGCCGACTCTTCCGCCAATTGTTCGATCATGCGGGCGTTGCCTTGCACTTCATCGACCAGCTCACGCAAGCCCGACAGGCTCTGGCC  >  NC_002947/653244‑653386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.