| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 886720 = | 40 (0.950) | 6 (0.150) | 4/244 | NT | 13.5% | coding (2631/2718 nt) | PP_0767 | LuxR family transcriptional regulator |
| ? | NC_002947 | 886755 = | 39 (0.980) | coding (2666/2718 nt) | PP_0767 | LuxR family transcriptional regulator | |||||
CACTTTAACGAGCAATGACCTACAGGGCCAGTATCACGCCAGCAACCCCAGGGATTTGGCCTTGGCCACCGCCTGGGTGCGCCGCTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/886840‑886720‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCT > NC_002947/886755‑886900 CACTTTAACGAGCAATGACCTACAGGGCCAGTATCACGCCAGCAACCCCAGGGATTTGGCCTTGGCCACCGCCTGGGTGCGCCGCTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGG < 1:17852/121‑1CACTTTAACGAGCAATGACCTACAGGGCCAGTATCACGCCAGCAACCCCAGGGATTTGGCCTTGGCCACCGCCTGGGTGCGCCGCTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGG > 2:17852/1‑121 CGCTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGG > 2:199056/1‑149 CTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCC > 5:106643/1‑149 CTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCC > 5:18877/1‑149 CTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAG > 3:260642/1‑121 CTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAG < 4:260642/121‑1 GATGTGGCTGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATC < 6:18877/148‑1 GCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTCGGGTTGCTGGCGTGATACTGGCCCTGGAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATAGTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGcc > 7:198743/1‑145 TGGAGCTGCGCACCCAGGCGGTGGCCAAGGCCAAATCCATGGGGTTGCTGGCGTGATACTGGCCCTGTCGGTCATTGCTCGTTAAAGTCATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCT < 6:89439/149‑1 CACTTTAACGAGCAATGACCTACAGGGCCAGTATCACGCCAGCAACCCCAGGGATTTGGCCTTGGCCACCGCCTGGGTGCGCCGCTCCACGCCCAACTTGCTGTTGATGTGGCTGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/886840‑886720‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCT > NC_002947/886755‑886900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |