New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	886720 =	40 (0.950)	6 (0.150)	4/244	NT	13.5%	coding (2631/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	886755 =	39 (0.980)					coding (2666/2718 nt)	PP_0767	LuxR family transcriptional regulator

ACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCT  >  NC_002947/886608‑886900                                                                                                                                                    |                                                                                                                                                  ggccagataatatggcgtcaggccatcactttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                                                                  >  5:18877‑M1/113‑149 (MQ=255) ggccagataatatggcgtcaggccatcactttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                                                                  >  5:106643‑M1/113‑149 (MQ=255)   ccagataatatggcgtcaggccatcactttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAgcg                                                                                                                                                >  2:199056‑M1/111‑149 (MQ=255)            cTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCAcc                                                                                                                                         >  6:221750/1‑147 (MQ=255)             tGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGAGCACCCAg                                                                                                                                      >  3:136491/1‑149 (MQ=255)                           aTGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTggccaaggc                                                                                                                        <  8:220173/149‑1 (MQ=255)                             ctttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                                                                  <  4:260642‑M1/37‑1 (MQ=255)                             ctttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                                                                  >  3:260642‑M1/85‑121 (MQ=255)                                    cTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCt                                                                                                               <  8:151471/149‑1 (MQ=255)                                       gAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                                                              <  5:221750/147‑1 (MQ=255)                                       gAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                                                              <  5:103269/147‑1 (MQ=255)                                            gATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGc                                                                                                       >  8:1518/1‑149 (MQ=255)                                             aTTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCt                                                                                                      >  4:15314/1‑149 (MQ=255)                                             aTTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCACGCGGTGGCCAAGGCCAAATCCCTGGGGTTg                                                                                                        <  1:22653/147‑1 (MQ=255)                                               tGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTg                                                                                                     <  3:15314/148‑1 (MQ=255)                                                 cccAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCg                                                                                                  >  6:215946/1‑149 (MQ=255)                                                 cccAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCg                                                                                                  >  4:51479/1‑149 (MQ=255)                                                  ccAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGt                                                                                                 <  2:7920/149‑1 (MQ=255)                                                    aaGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGa                                                                                               >  5:103915/1‑149 (MQ=255)                                                         tGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                                                              >  2:196114/1‑129 (MQ=255)                                                         tGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                                                              <  1:196114/129‑1 (MQ=255)                                                           ttCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGc                                                                                        >  7:186727/1‑149 (MQ=255)                                                              cAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCt                                                                                     <  7:1518/149‑1 (MQ=255)                                                               aaTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGc                                                                                                                                    <  4:142239/101‑1 (MQ=255)                                                               aaTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGc                                                                                                                                    >  3:142239/1‑101 (MQ=255)                                                               aaTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTg                                                                                    <  5:215946/149‑1 (MQ=255)                                                                aTCTGCAGATCAGCGAGCCGCTGTTGATTTCCCTGCACACGGTTAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGt                                                                                   <  4:177942/149‑1 (MQ=255)                                                                aTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGt                                                                                   <  6:15494/149‑1 (MQ=255)                                                                 tCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTa                                                                                  <  3:51479/149‑1 (MQ=255)                                                                                gcgGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGccc                                                                                      >  1:100532/1‑130 (MQ=255)                                                                                gcgGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGccc                                                                                      <  2:100532/130‑1 (MQ=255)                                                                                  ggCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATTCTGGCCCTGTAGGTCATTGCTCGTTaaa                                                                 <  1:233790/149‑1 (MQ=255)                                                                                   gCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCTAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGGCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCGCTGTAGGTGATTGCTCGTTAAAg                                                                <  4:136491/149‑1 (MQ=255)                                                                                       ttCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGAt                                                            <  8:186727/149‑1 (MQ=255)                                                                                        tCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGAt                                                            <  6:254584/148‑1 (MQ=255)                                                                                              cccTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGa                                                     >  3:106528/1‑149 (MQ=255)                                                                                                      acGGTGAAGACCCACGCCAGCCACATAAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCGGGCGTGATACTGGCCCTGTAGGTCATTGGGCGTGATCGTGAGGGCCTGACGCGatat                                             >  2:242129/1‑149 (MQ=255)                                                                                                            aaGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCt                                        <  6:103915/148‑1 (MQ=255)                                                                                                             cgctccacgcccaacttgctgttgatgtggctggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTgg                                      >  2:199056‑M2/40‑149 (MQ=255)                                                                                                             aGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTTGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTgg                                      <  3:240054/149‑1 (MQ=255)                                                                                                               ctccacgcccaacttgctgttgatgtggctggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAg                                                                >  3:260642‑M2/38‑121 (MQ=255)                                                                                                               ctccacgcccaacttgctgttgatgtggctggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAg                                                                <  4:260642‑M2/84‑1 (MQ=255)                                                                                                               ctccacgcccaacttgctgttgatgtggctggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGcc                                    >  5:18877‑M2/38‑149 (MQ=255)                                                                                                               ctccacgcccaacttgctgttgatgtggctggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGcc                                    >  5:106643‑M2/38‑149 (MQ=255)                                                                                                                 CCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTg                                                              >  2:17852‑M1/1‑121 (MQ=255)                                                                                                                 CCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTg                                                              <  1:17852‑M1/121‑1 (MQ=255)                                                                                                                           cacaTCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTa                        >  6:133214/1‑149 (MQ=255)                                                                                                                                cAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGc                                     >  1:127223/1‑131 (MQ=255)                                                                                                                                cAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGc                                     <  2:127223/131‑1 (MQ=255)                                                                                                                                    gatgtggctggcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATc                <  6:18877‑M2/132‑1 (MQ=255)                                                                                                                                    aGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGc                                                         <  3:144581/107‑1 (MQ=255)                                                                                                                                    aGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGc                                                         >  4:144581/1‑107 (MQ=255)                                                                                                                                         gTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTgg                                      >  6:193092/1‑121 (MQ=255)                                                                                                                                         gTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTgg                                      <  5:193092/121‑1 (MQ=255)                                                                                                                                         gTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGAGAATGCTCTACCCTCATCTTTccc          >  6:24367/1‑149 (MQ=255)                                                                                                                                              gcgtggAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTCGGGTTGCTGGCGTGATACTGGCCCTGGAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATAGTATCTGGCCGACAATGCTCTACCCTCATCTTTCccgcc       >  7:198743‑M2/7‑145 (MQ=255)                                                                                                                                                 tggAGCTGCGCACCCAGGCGGTGGCCAAGGCCAAATCCATGGGGTTGCTGGCGTGATACTGGCCCTGTCGGTCATTGCTCGTTAAAGTCATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCt  <  6:89439‑M2/146‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGGCCGACAATGCTCTACCCTCATCTTTCCCGACCAGCT  >  NC_002947/886608‑886900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.