New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	886720 =	40 (0.950)	6 (0.150)	4/244	NT	13.5%	coding (2631/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	886755 =	39 (0.980)					coding (2666/2718 nt)	PP_0767	LuxR family transcriptional regulator

CACCTGCCGCCAGTGCCAATCGCCAGTACGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGG  >  NC_002947/886574‑886864                                                                                                                                                   |                                                                                                                                                 agctggtcgggaaagatgagggtagagcattgtcggccagataatatggcgtcaggccatgactttaacgagcaatgaccgacagggccagtatcacgccagcaaccccatggatttggccttggccaccgcctgggtgcgcagctCCa                                                                                                                                                <  6:89439‑M1/3‑1 (MQ=255)    cTGCCGCCAGTGCCAATCGCCAGTACGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACgc                                                                                                                                             <  7:80965/149‑1 (MQ=255)      ggcgggaaagatgagggtagagcattgtcggccagatactatggcgtcaggccatcactttaacgagcaatgacctccagggccagtatcacgccagcaacccgagggatttggccttggccaccgcctgggtgcgccgctCCACgc                                                                                                                                             >  7:198743‑M1/142‑147 (MQ=255)               gatgagggtagagcattgtcggccagataatatggcgtcaggccatcactttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATc                                                                                                                                   <  6:18877‑M1/16‑1 (MQ=255)                ccAATCGCCAGTACGGGAAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAACTAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCaa                                                                                                                                 <  1:81004/149‑1 (MQ=255)                    tCGCCAGTACGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAg                                                                                                                              >  2:22653/1‑148 (MQ=255)                      gCCAGTACGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGc                                                                                                                             >  5:160843/1‑147 (MQ=255)                       ccAGTACGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTGGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAg                                                                                                                          >  5:15494/1‑149 (MQ=255)                          gTACGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTg                                                                                                                       <  6:160843/149‑1 (MQ=255)                             cGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGc                                                                                                                    >  7:220173/1‑149 (MQ=255)                                gCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTg                                                                                                                 <  8:83150/149‑1 (MQ=255)                                   ggccagataatatggcgtcaggccatcactttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                              >  5:106643‑M1/113‑149 (MQ=255)                                   ggccagataatatggcgtcaggccatcactttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                              >  5:18877‑M1/113‑149 (MQ=255)                                     ccagataatatggcgtcaggccatcactttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAgcg                                                                                                            >  2:199056‑M1/111‑149 (MQ=255)                                              cTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCAcc                                                                                                     >  6:221750/1‑147 (MQ=255)                                               tGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGAGCACCCAg                                                                                                  >  3:136491/1‑149 (MQ=255)                                                             aTGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTggccaaggc                                                                                    <  8:220173/149‑1 (MQ=255)                                                               ctttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                              >  3:260642‑M1/85‑121 (MQ=255)                                                               ctttaacgagcaatgacctacagggccagtatcacgccagcaaccccagggatttggccttggccaccgcctgggtgcgccgctCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAg                                                                                                              <  4:260642‑M1/37‑1 (MQ=255)                                                                      cTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCt                                                                           <  8:151471/149‑1 (MQ=255)                                                                         gAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                          <  5:221750/147‑1 (MQ=255)                                                                         gAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                          <  5:103269/147‑1 (MQ=255)                                                                              gATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGc                                                                   >  8:1518/1‑149 (MQ=255)                                                                               aTTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCt                                                                  >  4:15314/1‑149 (MQ=255)                                                                               aTTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCACGCGGTGGCCAAGGCCAAATCCCTGGGGTTg                                                                    <  1:22653/147‑1 (MQ=255)                                                                                 tGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTg                                                                 <  3:15314/148‑1 (MQ=255)                                                                                   cccAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCg                                                              >  4:51479/1‑149 (MQ=255)                                                                                   cccAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCg                                                              >  6:215946/1‑149 (MQ=255)                                                                                    ccAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGt                                                             <  2:7920/149‑1 (MQ=255)                                                                                      aaGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGa                                                           >  5:103915/1‑149 (MQ=255)                                                                                           tGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                          <  1:196114/129‑1 (MQ=255)                                                                                           tGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTg                                                                          >  2:196114/1‑129 (MQ=255)                                                                                             ttCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGc                                                    >  7:186727/1‑149 (MQ=255)                                                                                                cAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCt                                                 <  7:1518/149‑1 (MQ=255)                                                                                                 aaTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGc                                                                                                <  4:142239/101‑1 (MQ=255)                                                                                                 aaTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGc                                                                                                >  3:142239/1‑101 (MQ=255)                                                                                                 aaTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTg                                                <  5:215946/149‑1 (MQ=255)                                                                                                  aTCTGCAGATCAGCGAGCCGCTGTTGATTTCCCTGCACACGGTTAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGt                                               <  4:177942/149‑1 (MQ=255)                                                                                                  aTCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGt                                               <  6:15494/149‑1 (MQ=255)                                                                                                   tCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTa                                              <  3:51479/149‑1 (MQ=255)                                                                                                                  gcgGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGccc                                                  <  2:100532/130‑1 (MQ=255)                                                                                                                  gcgGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGccc                                                  >  1:100532/1‑130 (MQ=255)                                                                                                                    ggCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATTCTGGCCCTGTAGGTCATTGCTCGTTaaa                             <  1:233790/149‑1 (MQ=255)                                                                                                                     gCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCTAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGGCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCGCTGTAGGTGATTGCTCGTTAAAg                            <  4:136491/149‑1 (MQ=255)                                                                                                                         ttCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGAt                        <  8:186727/149‑1 (MQ=255)                                                                                                                          tCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGAt                        <  6:254584/148‑1 (MQ=255)                                                                                                                                cccTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGa                 >  3:106528/1‑149 (MQ=255)                                                                                                                                        acGGTGAAGACCCACGCCAGCCACATAAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCGGGCGTGATACTGGCCCTGTAGGTCATTGGGCGTGATCGTGAGGGCCTGACGCGatat         >  2:242129/1‑149 (MQ=255)                                                                                                                                              aaGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCt    <  6:103915/148‑1 (MQ=255)                                                                                                                                               aGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTTGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTgg  <  3:240054/149‑1 (MQ=255)                                                                                                                                                   CCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTg                          >  2:17852‑M1/1‑121 (MQ=255)                                                                                                                                                   CCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTg                          <  1:17852‑M1/121‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CACCTGCCGCCAGTGCCAATCGCCAGTACGGGCAACGGCGAAGCGCTGAGTGGCCGCGAAATGGCTGTGCTCGAACTGATTGCCCAAGGCTGTTCCAATCAGCAGATCAGCGAGCGGCTGTTCATTTCCCTGCACACGGTGAAGACCCACGCCAGCCACATCAACAGCAAGTTGGGCGTGGAGCGGCGCACCCAGGCGGTGGCCAAGGCCAAATCCCTGGGGTTGCTGGCGTGATACTGGCCCTGTAGGTCATTGCTCGTTAAAGTGATGGCCTGACGCCATATTATCTGG  >  NC_002947/886574‑886864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.