New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1092602 =	50 (1.180)	3 (0.080)	3/244	NT	6.4%	coding (225/273 nt)	ptsH	phosphocarrier protein HPr
	?	NC_002947	1092684 =	40 (1.000)					coding (143/273 nt)	ptsH	phosphocarrier protein HPr

GCCGGCCGCTTCCCCTGCCAGGTACGGGTGGGTCGCGCCCCGGACAAGCTGGTGGATGGCAAGAGCATCATGGCGGTGATGATGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1092751‑1092602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatgATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGCGGCCGGCCACACCGACGAACTTGGCTGCCGCCCGGGCATGCAGACCCAGCTTGTTGATGATGGTGATTTCGCGGGCGGGCATCTG  >  NC_002947/1092684‑1092829                                                                                                                                                                                                                                                                                                          GCCGGCCGCTTCCCCTGCCAGGTACGGGTGGGTCGCGCCCCGGACAAGCTGGTGGATGGCAAGAGCATCATGGCGGTGATGATGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCAT                                                                                                                                                     >  4:155939/1‑149                  CCAGGTACGGGTGGGTCGCGCCCCGGACAAGCTGGTGGATGGCAAGAGCATCATGGCGGTGATGATGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCA                                                                                                                                                      <  5:194719/131‑1                  CCAGGTACGGGTGGGTCGCGCCCCGGACAAGCTGGTGGATGGCAAGAGCATCATGGCGGTGATGATGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCA                                                                                                                                                      >  6:194719/1‑131                                                               GAGCATCATGGCGGTGATGATGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGC                                                                                       >  8:154125/1‑149                                                                   ATCATGGCGGTGATGATGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGCGGCC                                                                                   >  3:245068/1‑149                                                                                   TGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGCGGCCGGCCACACCGACGAAC                                                                   <  7:154125/149‑1                                                                                                                                               ccggCATGATGCTCTTGCCATGCACCAGCTTGTCCGGGGCGCGAGCCACCCGTACCTGGCAGGGGAAGCGGCCGGCCACACCGACGAACTTGGCTGCCGCCCGGGCAGGCAGACCCAGCTTGTTGATGATGGTGATTTCGCGGGCGGGC       <  7:86351/145‑1                                                                                                                                                   CATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGCGGCCGGCCACACCGACGAACTTGGCTGCCGCCCGGGCATGCAGACCCAGCTTGTTGATGATGGTGATTTCGCGGGCGGGCATCT   >  1:21338/1‑149                                                                                                                                                    ATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGAACCTGGCAGGGGAAGCGGCCGGCCACACCGACGAACTTGGCTCCAGCCCGGGCATGCAGCCCCAGCTAGTTGATGATGGTGATTTCGCCGGCGGGCAGCTG  >  5:110237/1‑149                                                                                                                                                                                                                                                                                                          GCCGGCCGCTTCCCCTGCCAGGTACGGGTGGGTCGCGCCCCGGACAAGCTGGTGGATGGCAAGAGCATCATGGCGGTGATGATGCTGGCCGCAGGCAAAGGCACCCAGGTGCACCTGCATACCGAGGGCGAGCAGGACAGCGACGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1092751‑1092602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatgATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGCGGCCGGCCACACCGACGAACTTGGCTGCCGCCCGGGCATGCAGACCCAGCTTGTTGATGATGGTGATTTCGCGGGCGGGCATCTG  >  NC_002947/1092684‑1092829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.