New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1092602 =	50 (1.180)	3 (0.080)	3/244	NT	6.4%	coding (225/273 nt)	ptsH	phosphocarrier protein HPr
	?	NC_002947	1092684 =	40 (1.000)					coding (143/273 nt)	ptsH	phosphocarrier protein HPr

ATCGTCTGGCCAGCCTTGGGCTGTGTACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGCGGCCG  >  NC_002947/1092456‑1092749                                                                                                                                                   |                                                                                                                                                     cagctgcccgccggcgaaatcaccatcatcaactagctggggctgcatgcccgggctggagccaagttcgtcggtgtggccggccgcttcccctgccaggttcgggtgggtcgcgccccggacaagctggtggatggcaagagcatcat                                                                                                                                                    >  5:110237‑M1/147‑149 (MQ=255)  agatgcccgcccgcgaaatcaccatcatcaacaagctgggtctgcatgcccgggcggcagccaagttcgtcggtgtggccggccgcttcccctgccaggtacgggtgggtcgcgccccggacaagctggtggatggcaagagcatCATg                                                                                                                                                   >  1:21338‑M1/146‑149 (MQ=255)      gcccgcccgcgaaatcaccatcatcaacaagctgggtctgcctgcccgggcggcagccaagttcgtcggtgtggccggccgcttcccctgccaggtacgggtggctcgcgccccggacaagctggtgcatggcaagagcatcatgccgg                                                                                                                                               <  7:86351‑M1/8‑5 (MQ=255)       tGGCCAGCCTTGGGCTGTGTACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTc                                                                                                                                             >  2:261291/1‑149 (MQ=255)         gCCATCCTTGGGCTGTGTACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCg                                                                                                                                            <  7:56388/148‑1 (MQ=255)             gCCTTGGGCTGTGTACAGGCTTCTGTCTGATGATGGTGATGCATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTc                                                                                                                                       <  5:234226/149‑1 (MQ=255)                  gggCTGTGTACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGc                                                                                                                                   <  5:80129/148‑1 (MQ=255)                     cTGTGTACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGc                                                                                                                               >  1:117438/1‑149 (MQ=255)                          tACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCg                                                                                                                                            >  2:232433/1‑131 (MQ=255)                          tACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCg                                                                                                                                            <  1:232433/131‑1 (MQ=255)                             aGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTa                                                                                                                       >  8:176549/1‑149 (MQ=255)                              ggCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTAt                                                                                                                      <  1:261291/149‑1 (MQ=255)                               gCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATg                                                                                                                     >  7:97214/1‑149 (MQ=255)                                cTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGc                                                                                                                    <  5:242690/149‑1 (MQ=255)                                 ttCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATg                                                                                                                     >  2:191129/1‑147 (MQ=255)                                   ctgtctgATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTcc                                                                                                                                      >  4:45873/1‑128 (MQ=255)                                   ctgtctgATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTcc                                                                                                                                      <  3:45873/128‑1 (MQ=255)                                      tctgATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGt                                                                                                                <  8:97214/147‑1 (MQ=255)                                                gtgatggATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATGCGCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGt                                                                                                      <  1:191129/148‑1 (MQ=255)                                                 tgatggATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGcc                                                                                                   >  5:18259/1‑149 (MQ=255)                                                    tggATACCGCGATGGCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTCTTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCttt                                                                                                <  7:118427/149‑1 (MQ=255)                                                       aTACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCttt                                                                                                >  3:242497/1‑146 (MQ=255)                                                       aTACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCttt                                                                                                <  4:242497/146‑1 (MQ=255)                                                        tACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTACGTCAAAGAAATTGAAGATCAGCTCGACCAGCGCGTCCATC‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCt                                                                                            >  6:174270/1‑149 (MQ=255)                                                            gcgATGTCCTGACCTGTTGCAAGCGCAGGTTTGCGAGGCCTATTTGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGc                                                                                              <  7:166327/143‑1 (MQ=255)                                                                  gttcgtcggtgtggccggccgcttcccctgccaggtacgggtgggtcgcgccccggacaagctggtggatggcaagagcatCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGca                                                                                  <  7:154125‑M1/68‑1 (MQ=255)                                                                   ccTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGcat                                                                                 >  7:3515/1‑149 (MQ=255)                                                                    cTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGcatc                                                                                <  7:176549/149‑1 (MQ=255)                                                                            gTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGTGTGCCTTTGCCAGCGGCCCGCATCATAACCGc                                                                        >  6:189630/1‑149 (MQ=255)                                                                                  ggccgcttcccctgccaggtacgggtgggtcgcgccccggacaagctggtggatggcaagagcatCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCatgat                                                                  >  3:245068‑M1/66‑149 (MQ=255)                                                                                  gcgcAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATg                                                                                                                     <  4:245448/98‑1 (MQ=255)                                                                                  gcgcAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATg                                                                                                                     >  3:245448/1‑98 (MQ=255)                                                                                  gcgcAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGAACAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCatgat                                                                  >  1:74454/1‑149 (MQ=255)                                                                                      gcttcccctgccaggtacgggtgggtcgcgccccggacaagctggtggatggcaagagcatCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGctc                                                              >  8:154125‑M1/62‑149 (MQ=255)                                                                                       ggTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATGGCGGTGATGATGctgg                                                             <  3:225814/149‑3 (MQ=255)                                                                                                 gCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATccac                                                   <  2:117438/149‑1 (MQ=255)                                                                                                     aTTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTg                                                           <  1:134512/137‑1 (MQ=255)                                                                                                     aTTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTg                                                           >  2:134512/1‑137 (MQ=255)                                                                                                            ttCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCg                                        >  5:246134/1‑149 (MQ=255)                                                                                                               gTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCAc                                                                                                            <  2:234783/78‑1 (MQ=255)                                                                                                               gTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCAc                                                                                                            >  1:234783/1‑78 (MQ=255)                                                                                                               gTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCgggg                                     <  7:221205/149‑1 (MQ=255)                                                                                                               gTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCgggg                                     >  4:230043/1‑149 (MQ=255)                                                                                                                tCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCTGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGc                                                          <  6:47829/127‑1 (MQ=255)                                                                                                                tCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGc                                                          >  5:47829/1‑127 (MQ=255)                                                                                                                  aaaGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGgcgc                                  >  7:72998/1‑149 (MQ=255)                                                                                                                    aGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGa                                >  8:188961/1‑149 (MQ=255)                                                                                                                         ttgttgATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGacccac                           <  6:18259/149‑1 (MQ=255)                                                                                                                              gATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCAACCAGCTTGTCCGGGGCGCGACCCACCAGTa                      >  6:257339/1‑149 (MQ=255)                                                                                                                                  aGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCt                   <  7:188961/148‑1 (MQ=255)                                                                                                                                        aCCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCa               >  3:197025/1‑146 (MQ=255)                                                                                                                                        aCCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCa               <  4:197025/146‑1 (MQ=255)                                                                                                                                         ccAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAggg            >  4:216137/1‑148 (MQ=255)                                                                                                                                           aGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGaa         <  8:72998/149‑1 (MQ=255)                                                                                                                                            gcgcGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAg        >  1:254114/1‑149 (MQ=255)                                                                                                                                            gcgcGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAg        >  2:89689/1‑149 (MQ=255)                                                                                                                                                  ccATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGcggccg  >  3:155939/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ATCGTCTGGCCAGCCTTGGGCTGTGTACAGGCTTCTGTCTGATGATGGTGATGGATACCGCGATGTCCTGACCTGGTGCAAGCGCAGGTTTGCGAGGCCTATTCGCCTTCGTCAAAGAAATTGTTGATCAGCTCGACCAGCGCGTCCATG‑GCGTCGCTGTCCTGCTCGCCCTCGGTATGCAGGTGCACCTGGGTGCCTTTGCCTGCGGCCAGCATCATCACCGCCATGATGCTCTTGCCATCCACCAGCTTGTCCGGGGCGCGACCCACCCGTACCTGGCAGGGGAAGCGGCCG  >  NC_002947/1092456‑1092749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.