New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419958 =	49 (1.160)	3 (0.070)	3/250	NT	6.1%	coding (55/366 nt) noncoding (83/90 nt)	PP_1244 PP_mr17	hypothetical protein C4 ncRNA
	?	NC_002947	1420038 =	45 (1.100)					noncoding (3/90 nt)	PP_mr17	C4 ncRNA

CGTGCACTGTTTATGGCGGCTGTACGTGGGGCACCTTCGTGTGCGCCGAGTTACTCCGGGATCCTCGGTCTGTCAACCCATGTACAGCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1420050‑1419958 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaTAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTACAAGGAA  >  NC_002947/1420038‑1420183                                                                                                                                                                                                                                                 cgatctCTGTTTATGGCGGCTGTACGTGGGGCACCTTCGTGTGCGCCGAGTTACTCCGGGATCCTCGGTCTGTCAACCCATGTACAGCTGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTT                                                                                            <  3:124910/143‑1        TGTTTATGGCGGCTGTACGTGGGGCACCTTCGTGTGCGCCGAGTTACTCCGGGATCCTCGGTCTGTCAACCCATGTACAGCTGCCATAAACAGTGCACGTTTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTT                                                                                            >  4:124910/1‑142                GCGGCTGTACGTGGGGCACCTTCGTGTGCGCCGAGTTACTCCGGGATCCTCGGTCTGTCAACCCATGTACAGCTGCCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCC                                                                               >  3:141551/1‑147                                                                                           CCATAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTACAAGGAA  <  5:32400/149‑1                                                                                                                                                                                                                                                 CGTGCACTGTTTATGGCGGCTGTACGTGGGGCACCTTCGTGTGCGCCGAGTTACTCCGGGATCCTCGGTCTGTCAACCCATGTACAGCTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1420050‑1419958 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaTAAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTACAAGGAA  >  NC_002947/1420038‑1420183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.