| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1419958 = | 49 (1.160) | 3 (0.070) | 3/250 | NT | 6.1% | coding (55/366 nt) noncoding (83/90 nt) |
PP_1244 PP_mr17 |
hypothetical protein C4 ncRNA |
| ? | NC_002947 | 1420038 = | 45 (1.100) | noncoding (3/90 nt) | PP_mr17 | C4 ncRNA | |||||
ATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTACAAGGAAGGG > NC_002947/1419894‑1420186 | aTCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATa‑aa > 3:252945/1‑148 (MQ=255) ttGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGt > 1:118251/1‑149 (MQ=255) aaaatcaacggccggctttgacaggccgacgatttcccgcacacgtgcactgtttaTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCAta‑aacagagatcg < 3:124910‑M1/93‑7 (MQ=255) aaaatcaacggccggctttgacaggccgacgatttcccgcaaacgtgcactgtttaTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACa > 4:124910‑M1/57‑142 (MQ=255) aaaCATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACgtgt > 1:145976/1‑149 (MQ=255) aaaCATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACgagt > 2:103190/1‑149 (MQ=255) aaCATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACgtgt < 2:145976/148‑1 (MQ=255) aTCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCgg < 2:118251/149‑1 (MQ=255) tcCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCa > 1:72069/1‑137 (MQ=255) tcCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCa < 2:72069/137‑1 (MQ=255) tcCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGa > 5:72345/1‑148 (MQ=255) ccAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCTGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAg < 1:258444/132‑1 (MQ=255) ccAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAg > 2:258444/1‑132 (MQ=255) cAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGaaa < 2:249649/148‑1 (MQ=255) cAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGa < 4:59087/146‑1 (MQ=255) gATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAAtcgt > 6:80895/1‑149 (MQ=255) cATTTGAGCTGCCGCAAGCTTGATGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAAtcgtcg < 4:176516/148‑1 (MQ=255) ttGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTCAACGTGTGCGGGAAATCGTAGGcc > 8:173166/1‑149 (MQ=255) ggAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCt < 5:80895/148‑1 (MQ=255) gCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGt < 8:6111/144‑1 (MQ=255) gCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGt > 7:6111/1‑144 (MQ=255) cAAGCTTGCTGTCAAACACGAGGGGGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAgccgg < 3:38815/149‑1 (MQ=255) aGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAgccggcc < 5:189330/149‑1 (MQ=255) tCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGAtttt > 3:217837/1‑149 (MQ=255) cgatctctgtttatggcggctgtacgtggggcaccttcgtgtgcgccgagttactccgggatcctcggtctgtcaacccatgtacagctgccaTA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGAtttt < 3:124910‑M2/56‑1 (MQ=255) aCAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCaa > 6:238389/1‑149 (MQ=255) tgtttatggcggctgtacgtggggcaccttcgtgtgcgccgagttactccgggatcctcggtctgtcaacccatgtacagctgccaTA‑AACAGTGCACGTTTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGAtttt > 4:124910‑M2/87‑142 (MQ=255) gcggctgtacgtggggcaccttcgtgtgcgccgagttactccgggatcctcggtctgtcaacccatgtacagctgccaTA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGcc > 3:141551‑M2/79‑147 (MQ=255) aGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCgag > 3:140567/1‑148 (MQ=255) tACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTa < 6:72345/147‑1 (MQ=255) aCATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGAtttt > 3:119178/1‑126 (MQ=255) aCATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGAtttt < 4:119178/126‑1 (MQ=255) gACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCg > 6:32400/1‑148 (MQ=255) aCCGAGGATCCCGGAGTAACTGGGCGAACATGAAGGTGCCCCACGTACAGCCGCCATA‑AAGAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAAt < 8:250936/146‑1 (MQ=255) aCCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCg > 1:76369/1‑149 (MQ=255) aCCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGACCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTAAAAGCCGGCCGTTCATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGaaa > 7:250936/1‑145 (MQ=255) ccGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGt < 4:140567/149‑1 (MQ=255) cGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCAGGTGTGGGGGAAATCGTCGGTCTGTCAAAGCCGGACGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTc < 7:173166/149‑1 (MQ=255) cGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTc < 4:252945/149‑1 (MQ=255) ccGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGt > 7:9759/1‑149 (MQ=255) cGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGtt > 1:109583/1‑149 (MQ=255) ggAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATAGAACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAac > 1:195726/1‑106 (MQ=255) ggAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAac < 2:195726/105‑1 (MQ=255) tCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGt > 3:260534/1‑149 (MQ=255) cgcACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTgg > 2:96491/1‑148 (MQ=255) gAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGAATTTGCAACGACGAGCCGAGACTAGAGCGCGCCCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGt > 1:86188/1‑149 (MQ=255) gAAGGTGCCCCACGTACAGCCGCCATA‑AACAGAGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGt > 1:33152/1‑149 (MQ=255) ggTGCCCCACGTACTGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATAGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTGTGTTTg < 3:197318/149‑1 (MQ=255) ccACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTCGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGttt < 6:215194/121‑1 (MQ=255) ccACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTCGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGttt > 5:215194/1‑121 (MQ=255) ccACGTACAGCCGCCATA‑AACAGTGCACGTGTCCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACAGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAAc > 1:199075/1‑149 (MQ=255) aGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTAc > 2:59943/1‑148 (MQ=255) ccaTA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTACaaggaa < 5:32400‑M2/146‑1 (MQ=255) tA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTACAAGGAAggg < 2:76369/149‑1 (MQ=255) | ATCTTGCGCATAAACATCTCCAGGATCATTGGAGCTGCCGCAAGCTTGCTGTCAAACAAGAGGGTGGCAGCTGTACATGGGTTGACAGACCGAGGATCCCGGAGTAACTCGGCGCACACGAAGGTGCCCCACGTACAGCCGCCATA‑AACAGTGCACGTGTGCGGGAAATCGTCGGCCTGTCAAAGCCGGCCGTTGATTTTGCAACGACGAGCCGAGACTAGAGCGCGACCGAATCCGTCGCAACCGTTTGAGCGGGTTGGCAGTATGTTTGGGAAACGCCCTACAAGGAAGGG > NC_002947/1419894‑1420186 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |