New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1759854	50 (1.180)	4 (0.100)	3/244	NT	8.8%	coding (1017/1296 nt)	PP_1565	HK97 family portal protein
	?	NC_002947	= 1759902	36 (0.900)					coding (1065/1296 nt)	PP_1565	HK97 family portal protein

CAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1759759‑1759854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcGCTATCCATGCGCAGCAACCCTTCCGGGTTGAACTTCACGTAGAAGCGGCGGCG  <  NC_002947/1759902‑1759849                                                                                                                                                        cacATGAACGGGTACCTGTCGTTCCCCCTCCTGCCCGGCATCAAGGCCATTG‑AATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCGCTATCCATGCGCAGCAACCCTTCCGGGTTGAACTTCACGTAGAAGCGGCGGCG  <  6:8402/146‑1  AGATGATCGGCTTCCTGGCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAACTGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCGCTATCCATGCGCAGCAACCCTTCCGGGTTGAACTTCACGTAGAAGCGGCGGCG  <  4:29547/149‑1                                         TCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCGCTATCCATGCGCAGCAACCCTTCCGGGTTGAACTTCACGT               <  7:200257/97‑1                                         TCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCGCTATCCATGCGCAGCAACCCTTCCGGGTTGAACTTCACGT               >  8:200257/1‑97                                                                                                                                                        CAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1759759‑1759854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcGCTATCCATGCGCAGCAACCCTTCCGGGTTGAACTTCACGTAGAAGCGGCGGCG  <  NC_002947/1759902‑1759849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.