New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1759854	50 (1.180)	4 (0.100)	3/244	NT	8.8%	coding (1017/1296 nt)	PP_1565	HK97 family portal protein
	?	NC_002947	= 1759902	36 (0.900)					coding (1065/1296 nt)	PP_1565	HK97 family portal protein

GCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAGCTCACCGTGCAATCCAACATGCTGCCGATCGACAAG  >  NC_002947/1759769‑1760046                                                                                                                                      |                                                                                                                                                 gCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGATGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACACGGAAGGGTTGCTGCGCATCGATAGCGCGGCGCGTGCGTcc                                                                                                                                   >  2:29245/1‑149 (MQ=255)           gTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCt                                                                                                                         <  8:143837/149‑1 (MQ=255)              cACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCtt                                                                                                                                 >  7:135192/1‑138 (MQ=255)              cACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCtt                                                                                                                                 <  8:135192/138‑1 (MQ=255)                 ccTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGGCTTCTAc                                                                                                                             <  6:238309/139‑1 (MQ=255)                 ccTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTAc                                                                                                                             >  5:238309/1‑139 (MQ=255)                 ccTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGa                                                                                                                   <  5:13187/149‑1 (MQ=255)                     cTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGAcc                                                                                                                 <  6:51757/147‑1 (MQ=255)                         ccTGGATCAAGCGCATTGAAATGTTCGCCAACCGGCGGCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCTCATTGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGaa                                                                                                            <  1:29245/148‑1 (MQ=255)                          cTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACg                                                                                                          >  2:200745/1‑149 (MQ=255)                              aTCAAGAGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGGAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTAt                                                                                                      <  1:106012/149‑1 (MQ=255)                               tCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATc                                                                                                     <  1:269279/149‑1 (MQ=255)                                       aTTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCg                                                                                             >  5:190694/1‑149 (MQ=255)                                           aaaTGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGAc                                                                                         >  7:140318/1‑149 (MQ=255)                                              tgtgCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGAc                                                                                         >  8:240658/1‑146 (MQ=255)                                              tgtgCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGAc                                                                                         <  7:240658/146‑1 (MQ=255)                                                tgCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTg                                                                                    >  2:46905/1‑149 (MQ=255)                                                          ggCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCGATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGaaa                                                                          <  1:190998/149‑1 (MQ=255)                                                          ggCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGaaa                                                                          <  5:227088/149‑1 (MQ=255)                                                           gcgcCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTg                                                                             <  4:10696/145‑1 (MQ=255)                                                           gcgcCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTg                                                                             >  3:10696/1‑145 (MQ=255)                                                               ctgctgCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAgaga                                                                      >  5:43358/1‑148 (MQ=255)                                                               ctgctgCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGaa                                                                     <  8:140318/149‑1 (MQ=255)                                                                      gACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGccc                                                              <  1:46905/149‑1 (MQ=255)                                                                          aGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCg                                                           >  8:166090/1‑148 (MQ=255)                                                                           gATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGAcc                                                                                                                 >  7:7979/1‑93 (MQ=255)                                                                           gATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGAcc                                                                                                                 <  8:7979/93‑1 (MQ=255)                                                                           gATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCgga                                                         <  7:166090/149‑1 (MQ=255)                                                                                gcgcCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCggagggag                                                    >  7:228135/1‑149 (MQ=255)                                                                                 cgccgccgcTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCgcggcgctcatctggtcgcagcaggcgccggttggcgcacattcaatggccttgatgccgggcaggagggggaacgacaggtacccgttcatgtg                                                   <  6:8402‑M2/149‑96 (MQ=255)                                                                                 cgccgccgcTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCgcggcgctcatctggtcgcagcaggcgccggttggcgcacagttcaatgcgcttgatccagggaagcagggtgaacgccaggaagccgatcatct                                                   <  4:29547‑M2/149‑96 (MQ=255)                                                                                    cgccgcTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAATATGCCCCCGGAGGGAGGCaa                                                <  2:23731/149‑1 (MQ=255)                                                                                              aCGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCgcggcgctcatctggtcgcagcaggcgccggttggcgcacatttcaatgcgcttga                                                                                          <  7:200257‑M2/97‑57 (MQ=255)                                                                                              aCGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCgcggcgctcatctggtcgcagcaggcgccggttggcgcacatttcaatgcgcttga                                                                                          >  8:200257‑M2/1‑41 (MQ=255)                                                                                               cGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAg                                      <  6:190694/148‑1 (MQ=255)                                                                                                   aaGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAGCTCAc                                 >  5:149821/1‑149 (MQ=255)                                                                                                     gTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAGCTCACCg                               >  3:133350/1‑149 (MQ=255)                                                                                                          aCCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACATCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAgaga                                                                      <  8:162401/105‑1 (MQ=255)                                                                                                          aCCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAgaga                                                                      >  7:162401/1‑105 (MQ=255)                                                                                                               gAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAGCTCACCGTGCAATCCaa                     <  6:43358/149‑1 (MQ=255)                                                                                                                                      cgcggcgcgTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAGCTCACCGTGCAATCCAACATGCTGCCGATCGACAAg  >  6:17473/1‑145 (MQ=255)                                                                                                                                      cgcggcgcgTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAGCTCACCGTGCAATCCAACATGCTGCCGATCGACAAg  <  5:17473/145‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                 GCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAACGCGGCGAAGCTCACCGTGCAATCCAACATGCTGCCGATCGACAAG  >  NC_002947/1759769‑1760046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.