New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1759854	50 (1.180)	4 (0.100)	3/244	NT	8.8%	coding (1017/1296 nt)	PP_1565	HK97 family portal protein
	?	NC_002947	= 1759902	36 (0.900)					coding (1065/1296 nt)	PP_1565	HK97 family portal protein

GATGGTCGGGCATACGCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAA  >  NC_002947/1759707‑1760000                                                                                                                                                    |                                                                                                                                                   gATGGTCGGGCATACGCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGcgccgcc                                                                                                                                                   >  4:38370/1‑149 (MQ=255)         ggCATACGCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTAc                                                                                                                                           <  6:243099/149‑1 (MQ=255)                gCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGt                                                                                                                                    >  7:143837/1‑149 (MQ=255)                gCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGt                                                                                                                                    >  6:227088/1‑149 (MQ=255)                gCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGt                                                                                                                                    >  5:51757/1‑149 (MQ=255)                gCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGt                                                                                                                                    >  2:73581/1‑149 (MQ=255)                  aaaaCTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAg                                                                                                                                     <  5:18771/146‑1 (MQ=255)                  aaaaCTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAg                                                                                                                                     >  6:18771/1‑146 (MQ=255)                     aCTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAAc                                                                                                                               <  2:189265/149‑1 (MQ=255)                           ccaGCTGGGGCACTGGCATGGAGCAGCAGAAGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCgg                                                                                                                           >  1:23731/1‑147 (MQ=255)                                        tGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCt                                                                                                                                             <  6:65131/116‑1 (MQ=255)                                        tGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCt                                                                                                                                             >  5:65131/1‑116 (MQ=255)                                        tGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTtgctg                                                                                                                <  8:242322/145‑1 (MQ=255)                                        tGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTtgctg                                                                                                                >  7:242322/1‑145 (MQ=255)                                        tGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCa                                                                                                            >  6:13187/1‑149 (MQ=255)                                          gCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCAt                                                                                                           <  3:38370/148‑1 (MQ=255)                                          gCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCAt                                                                                                           <  4:55500/148‑1 (MQ=255)                                          gCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCAAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCAt                                                                                                           <  6:132460/148‑1 (MQ=255)                                            cctatctagcagTTGATCGGCTTCCTGTCTTTCACCCTGCTTCCCTGGATCAAGCGCATTTAAATGTGCGCCAACAGGCGCCTGCTGCGAGCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAATGGTTGCTGCGCATgg                                                                                                         <  5:50028/141‑1 (MQ=255)                                               gAGCAGCAGATGATCGGCTTCCAGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAg                                                                                                     >  2:190998/1‑149 (MQ=255)                                                    gcagATGATCGGCTTCCTGTCGTTAACCCTCCTTCACTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTCATGCGACCAGATGAGCGCCGCCGCTTCTACGTGAATTAAAAAACGCAAGGGATGCTGCGCAtcg                                                                                                         >  6:50028/1‑138 (MQ=255)                                                     cacatgaacggGTACCTGTCGTTCCCCCTCCTGCCCGGCATCAAGGCCATTG‑AATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCgctatccatgcgcagcaacccttccgggttgaacttcacgtagaagcggcggcg                                                                                              <  6:8402‑M1/146‑55 (MQ=255)                                                      agATGATCGGCTTCCTGGCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAACTGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCgctatccatgcgcagcaacccttccgggttgaacttcacgtagaagcggcggcg                                                                                              <  4:29547‑M1/149‑55 (MQ=255)                                                          gatCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGt                                                                                                                                         >  4:35411/1‑102 (MQ=255)                                                               gCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGATGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACACGGAAGGGTTGCTGCGCATCGATAGCGCGGCGCGTGCGTcc                                                                                     >  2:29245/1‑149 (MQ=255)                                                                         gTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCt                                                                           <  8:143837/149‑1 (MQ=255)                                                                            cACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCtt                                                                                   >  7:135192/1‑138 (MQ=255)                                                                            cACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCtt                                                                                   <  8:135192/138‑1 (MQ=255)                                                                               ccTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGGCTTCTAc                                                                               <  6:238309/139‑1 (MQ=255)                                                                               ccTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTAc                                                                               >  5:238309/1‑139 (MQ=255)                                                                               ccTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGa                                                                     <  5:13187/149‑1 (MQ=255)                                                                                   cTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGAcc                                                                   <  6:51757/147‑1 (MQ=255)                                                                                       ccTGGATCAAGCGCATTGAAATGTTCGCCAACCGGCGGCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCTCATTGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGaa                                                              <  1:29245/148‑1 (MQ=255)                                                                                        cTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACg                                                            >  2:200745/1‑149 (MQ=255)                                                                                            aTCAAGAGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGGAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTAt                                                        <  1:106012/149‑1 (MQ=255)                                                                                             tCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCgctatccatgcgcagcaacccttccgggttgaacttcacgt                                                                                                           >  8:200257‑M1/1‑56 (MQ=255)                                                                                             tCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCgctatccatgcgcagcaacccttccgggttgaacttcacgt                                                                                                           <  7:200257‑M1/97‑42 (MQ=255)                                                                                             tCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATc                                                       <  1:269279/149‑1 (MQ=255)                                                                                                     aTTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCg                                               >  5:190694/1‑149 (MQ=255)                                                                                                         aaaTGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGAc                                           >  7:140318/1‑149 (MQ=255)                                                                                                            tgtgCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGAc                                           <  7:240658/146‑1 (MQ=255)                                                                                                            tgtgCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGAc                                           >  8:240658/1‑146 (MQ=255)                                                                                                              tgCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTg                                      >  2:46905/1‑149 (MQ=255)                                                                                                                        ggCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCGATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGaaa                            <  1:190998/149‑1 (MQ=255)                                                                                                                        ggCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGaaa                            <  5:227088/149‑1 (MQ=255)                                                                                                                         gcgcCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTg                               <  4:10696/145‑1 (MQ=255)                                                                                                                         gcgcCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTg                               >  3:10696/1‑145 (MQ=255)                                                                                                                             ctgctgCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAgaga                        >  5:43358/1‑148 (MQ=255)                                                                                                                             ctgctgCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGaa                       <  8:140318/149‑1 (MQ=255)                                                                                                                                    gACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGccc                <  1:46905/149‑1 (MQ=255)                                                                                                                                        aGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCg             >  8:166090/1‑148 (MQ=255)                                                                                                                                         gATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGAcc                                                                   >  7:7979/1‑93 (MQ=255)                                                                                                                                         gATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGAcc                                                                   <  8:7979/93‑1 (MQ=255)                                                                                                                                         gATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCgga           <  7:166090/149‑1 (MQ=255)                                                                                                                                              gcgcCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCggagggag      >  7:228135/1‑149 (MQ=255)                                                                                                                                               cgccgccgcTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCgcggcgctcatctggtcgcagcaggcgccggttggcgcacattcaatggccttgatgccgggcaggagggggaacgacaggtacccgttcatgtg     <  6:8402‑M2/149‑96 (MQ=255)                                                                                                                                               cgccgccgcTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCgcggcgctcatctggtcgcagcaggcgccggttggcgcacagttcaatgcgcttgatccagggaagcagggtgaacgccaggaagccgatcatct     <  4:29547‑M2/149‑96 (MQ=255)                                                                                                                                                  cgccgcTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAATATGCCCCCGGAGGGAGGCaa  <  2:23731/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GATGGTCGGGCATACGCAAAACTCCACCAGCTGGGGCACTGGCATGGAGCAGCAGATGATCGGCTTCCTGTCGTTCACCCTGCTTCCCTGGATCAAGCGCATTGAAATGTGCGCCAACCGGCGCCTGCTGCGACCAGATGAGCGCCGCCGCTTCTACGTGAAGTTCAACCCGGAAGGGTTGCTGCGCATGGATAGCGCGGCGCGTGCGGCCTTCTACAGCTCCATGACCCAGAACGGTATCTACACCCGGGACGAGTGCCGGCTGAAAGAGAACATGCCCCCGGAGGGAGGCAA  >  NC_002947/1759707‑1760000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.