New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2062163 =	45 (1.070)	3 (0.070)	3/246	NT	6.5%	coding (1078/2058 nt)	PP_1838	membrane protein
	?	NC_002947	2062226 =	44 (1.090)					coding (1141/2058 nt)	PP_1838	membrane protein

GACAGCTTATGGCCGCCTTCCGGGGTCTGCATCAGGTATTCGAAACCTGGCAGGTTGGGGAAGCAGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2062233‑2062163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccatAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCTTCATCGGCCGTAATGACTTCGTCAAC  >  NC_002947/2062226‑2062372                                                                                                                                                                                                                            GACAGCTTATGGCCGCCTTCCGGGGTCTGCATCAGGTATTCGAAACCTGGCAGGTTGGGGAAGCAGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGG                                                                       >  4:145029/1‑149          TGGCCGCCTTCCGGGGTCTGCATCAGGTATTCGAAACCTGGCAGGTTGGGGAAGCAGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGC                                                                                   >  3:49567/1‑128          TGGCCGCCTTCCGGGGTCTGCATCAGGTATTCGAAACCTGGCAGGTTGGGGAAGCAGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGC                                                                                   <  4:49567/128‑1                                                                      ATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCTTCATCGGCCGTAATGACTTCGTCAAC  <  3:145029/149‑1                                                                                                                                                                                                                            GACAGCTTATGGCCGCCTTCCGGGGTCTGCATCAGGTATTCGAAACCTGGCAGGTTGGGGAAGCAGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2062233‑2062163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccatAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCTTCATCGGCCGTAATGACTTCGTCAAC  >  NC_002947/2062226‑2062372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.