New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2062163 =	45 (1.070)	3 (0.070)	3/246	NT	6.5%	coding (1078/2058 nt)	PP_1838	membrane protein
	?	NC_002947	2062226 =	44 (1.090)					coding (1141/2058 nt)	PP_1838	membrane protein

CTTTGACAAGCTGGCCAAAGAAGGCCTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCTTCATCGGCCGTAATGACTTCGTCAAC  >  NC_002947/2062078‑2062372                                                                                                                                                     |                                                                                                                                                   cTTTGACAAGCTGGCCAAAGAAGGCCTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATa                                                                                                                                                    <  7:130428/149‑1 (MQ=255)    tGACAAGCTGGCCAAAGAAGGCCTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATaa                                                                                                                                                   <  5:104416/147‑1 (MQ=255)       cAAGCTGGCCAAAGAAGGCCTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGt                                                                                                                                              <  4:93997/149‑1 (MQ=255)        ccaggcaaagtcgccgttgtagacgtacacatcgtcgtagtcacgggcgctgagcagggccggcaggcccgacagcttATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTc                                                                                                                                             >  4:145029‑M1/79‑149 (MQ=255)                     aagGCCTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGcc                                                                                                                                <  6:99529/149‑1 (MQ=255)                       ggCCTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCt                                                                                                                              >  8:123831/1‑149 (MQ=255)                         ccTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGc                                                                                                                            <  8:133709/149‑1 (MQ=255)                          ctgctgTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGc                                                                                                                                     <  5:248526/139‑1 (MQ=255)                          ctgctgTTCGACCGCTTCTTCTACAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGc                                                                                                                                     >  6:248526/1‑139 (MQ=255)                           tgctgTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCt                                                                                                                           >  1:34287/1‑148 (MQ=255)                             ctgTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCa                                                                                                                         <  2:246874/148‑1 (MQ=255)                                ttCGCCCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAgc                                                                                                                       <  5:150787/147‑1 (MQ=255)                                ttCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGcc                                                                                                                                >  3:54401/1‑138 (MQ=255)                                ttCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGcc                                                                                                                                <  4:54401/138‑1 (MQ=255)                                ttCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGcc                                                                                                                                <  4:50740/138‑1 (MQ=255)                                ttCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGcc                                                                                                                                >  3:50740/1‑138 (MQ=255)                                ttCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAgcgc                                                                                                                     >  6:153347/1‑149 (MQ=255)                                   gACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCTGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCg                                                                                                                  >  4:60244/1‑149 (MQ=255)                                               tcCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTAcgacga                                                                                                      >  1:27857/1‑149 (MQ=255)                                                  aaCGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAgcgc                                                                                                                     >  6:77098/1‑131 (MQ=255)                                                  aaCGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAgcgc                                                                                                                     <  5:77098/131‑1 (MQ=255)                                                  aaCGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGAtgt                                                                                                   >  6:218953/1‑149 (MQ=255)                                                       cACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACg                                                                                              <  5:218953/149‑1 (MQ=255)                                                               cccACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAAc                                                                                      <  5:153347/149‑1 (MQ=255)                                                                ccaccaGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGAt                                                                                                     <  6:207767/133‑1 (MQ=255)                                                                ccaccaGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGAt                                                                                                     >  5:207767/1‑133 (MQ=255)                                                                ccaccaGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACg                                                                                     >  5:169793/1‑149 (MQ=255)                                                                    caGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGa                                                                                 <  2:34287/149‑1 (MQ=255)                                                                        gCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACttt                                                                             <  2:27857/149‑1 (MQ=255)                                                                             ttCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTg                                                                        >  1:178709/1‑149 (MQ=255)                                                                              gacagcttatggccgccttccggggtctgcatcaggtattcgaaacctggcaggttggggaagcaggccatAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTgg                                                                       >  4:145029‑M2/72‑149 (MQ=255)                                                                                     caTGGCCTGCCTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAAc                                                                 >  3:259988/1‑148 (MQ=255)                                                                                       tggccgccttccggggtctgcatcaggtattcgaaacctggcaggttggggaagcaggccatAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGc                                                                                   <  4:49567‑M2/66‑1 (MQ=255)                                                                                       tggccgccttccggggtctgcatcaggtattcgaaacctggcaggttggggaagcaggccatAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGc                                                                                   >  3:49567‑M2/63‑128 (MQ=255)                                                                                                   ccAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCgg                                                         <  7:247868/142‑1 (MQ=255)                                                                                                   ccAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCgg                                                         >  8:247868/1‑142 (MQ=255)                                                                                                         tGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTGCAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAAc                                            >  2:210985/1‑149 (MQ=255)                                                                                                         tGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAAc                                            >  5:240168/1‑149 (MQ=255)                                                                                                           ccAGGTTTCGAATACCTGATGCAGACCCTGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAAc                                            <  3:60244/147‑1 (MQ=255)                                                                                                              ggTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGGAACCAggg                                       <  4:259988/149‑1 (MQ=255)                                                                                                               gTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTGCAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAgggg                                      <  1:210985/149‑1 (MQ=255)                                                                                                                    gAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAggg                                       >  4:161463/1‑143 (MQ=255)                                                                                                                    gAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAggg                                       <  3:161463/143‑1 (MQ=255)                                                                                                                    gAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGac                                 >  3:237231/1‑149 (MQ=255)                                                                                                                     aaTACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGacc                                <  6:169793/149‑1 (MQ=255)                                                                                                                      aTACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGacc                                <  4:237231/148‑1 (MQ=255)                                                                                                                           tGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCtt                           >  7:116451/1‑148 (MQ=255)                                                                                                                              tGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCTTCATc                       <  4:26768/149‑1 (MQ=255)                                                                                                                                   aCCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTAcgacga                                                                                                      >  5:140716/1‑65 (MQ=255)                                                                                                                                   aCCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTAcgacga                                                                                                      <  6:140716/65‑1 (MQ=255)                                                                                                                                          aaGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCTCCTTCATCGGCCGTAATGAc           <  2:178709/149‑1 (MQ=255)                                                                                                                                                   atAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCTTCATCGGCCGTAATGACTTCGTCAAc  <  3:145029‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CTTTGACAAGCTGGCCAAAGAAGGCCTGCTGTTCGACCGCTTCTTCTCCAACGGCACCCATACCCACCAGGGCATGTTCGCCACCATGGCCTGCTTCCCCAACCTGCCAGGTTTCGAATACCTGATGCAGACCCCGGAAGGCGGCCATAAGCTGTCGGGCCTGCCGGCCCTGCTCAGCGCCCGTGACTACGACGATGTGTACGTCTACAACGGCGACTTTGCCTGGGACAACCAGTCCGGGTTCTTCGGCAACCAGGGGATGACCACCTTCATCGGCCGTAATGACTTCGTCAAC  >  NC_002947/2062078‑2062372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.