New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2260265	28 (0.660)	3 (0.070)	3/250	NT	8.8%	coding (853/2736 nt)	fimV	motility protein FimV
	?	NC_002947	= 2260300	35 (0.860)					coding (888/2736 nt)	fimV	motility protein FimV

GTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2260116‑2260265 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgGCTGGTGTCCAGGCTTTCCTGGGCCATGGCCAGCTCGTCATTCAA  <  NC_002947/2260300‑2260256                                                                                                                                                                                                     GTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGAC                                                <  2:242275/149‑1                                        GCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGGCTGGTGTCCAGGCTTTCCTGGGCCATGGCCAGCTCGT         <  1:151350/149‑1                                                           TGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGGCTGGTGTCCAGGCTTTCCTGGGCCATGGCCAGCTCGTCATTCAA  >  1:41500/1‑137                                                           TGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGGCTGGTGTCCAGGCTTTCCTGGGCCATGGCCAGCTCGTCATTCAA  <  2:41500/137‑1                                                                                                                                                                                                     GTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2260116‑2260265 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgGCTGGTGTCCAGGCTTTCCTGGGCCATGGCCAGCTCGTCATTCAA  <  NC_002947/2260300‑2260256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.