New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2260265	28 (0.660)	3 (0.070)	3/250	NT	8.8%	coding (853/2736 nt)	fimV	motility protein FimV
	?	NC_002947	= 2260300	35 (0.860)					coding (888/2736 nt)	fimV	motility protein FimV

CTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGC  >  NC_002947/2260121‑2260411                                                                                                                                                 |                                                                                                                                                   cTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCCGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCt                                                                                                                                                >  7:129249/1‑149 (MQ=255)     gACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGc                                                                                                                                             >  6:208109/1‑148 (MQ=255)      aCCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCa                                                                                                                                           >  8:94078/1‑149 (MQ=255)                    aGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGc                                                                                                                             <  2:255334/149‑1 (MQ=255)                      cTGGATGCCACTGGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCt                                                                                                                           <  8:168896/149‑1 (MQ=255)                       tGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACGGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTTAATGACGAGCTGGCCATGGCCCAGGAAAGCCTg                                                                                                                          <  8:117040/149‑1 (MQ=255)                         gATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTg                                                                                                                          <  7:94078/147‑1 (MQ=255)                         gATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTg                                                                                                                          <  6:218574/147‑1 (MQ=255)                              cACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGCCAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGccac                                                                                                                     >  3:137745/1‑147 (MQ=255)                                   gCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGgctggtgtccaggctttcctgggccatggccagctcgt                                                                                                              <  1:151350‑M1/149‑39 (MQ=255)                                           gccgccGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTcgc                                                                                                           >  5:16174/1‑144 (MQ=255)                                           gccgccGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTcgc                                                                                                           <  6:16174/144‑1 (MQ=255)                                           gccgccGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACaa                                                                                                      >  3:126684/1‑149 (MQ=255)                                                      tGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGgctggtgtccaggctttcctgggccatggccagctcgtcattcaa                                                                                                       <  2:41500‑M1/137‑46 (MQ=255)                                                      tGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGgctggtgtccaggctttcctgggccatggccagctcgtcattcaa                                                                                                       >  1:41500‑M1/1‑92 (MQ=255)                                                         aCCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaa                                                                                          >  6:137779/1‑147 (MQ=255)                                                           cGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGc                                                                                      >  8:122735/1‑149 (MQ=255)                                                               gcgTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCa                                                                                  <  2:24451/149‑1 (MQ=255)                                                                   aTCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCAAGGc                                                                              >  2:85927/1‑149 (MQ=255)                                                                    tCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGcc                                                                             >  5:102114/1‑149 (MQ=255)                                                                         cAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaa                                                                                          >  1:104861/1‑131 (MQ=255)                                                                         cAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaa                                                                                          <  2:104861/131‑1 (MQ=255)                                                                          aGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTg                                                                       >  5:69778/1‑149 (MQ=255)                                                                                   aCCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAg                                                              <  6:69778/149‑1 (MQ=255)                                                                                     cTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATCGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCt                                                            <  1:85927/149‑1 (MQ=255)                                                                                                     cGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAgcgc                                            >  2:3989/1‑149 (MQ=255)                                                                                                         cAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGa                                        <  8:129249/149‑1 (MQ=255)                                                                                                               tgCCGGTGCATGCCAGGCCAAGGCGTTTAATGACGAGCTTGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGc                                  <  5:208109/148‑1 (MQ=255)                                                                                                                    gTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGAt                                       <  6:108147/139‑1 (MQ=255)                                                                                                                    gTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGAt                                       >  5:108147/1‑139 (MQ=255)                                                                                                                       caggccaggcCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTgaagaa                           >  5:145239/1‑148 (MQ=255)                                                                                                                          gccaggccaAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGaacaac                       >  7:155705/1‑149 (MQ=255)                                                                                                                                        ttGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgca                     >  1:41500‑M2/1‑45 (MQ=255)                                                                                                                                        ttGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgca                     <  2:41500‑M2/137‑93 (MQ=255)                                                                                                                                               aCGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgcagcctcggcggcgccacggc  <  1:151350‑M2/149‑112 (MQ=255)                                                                                                                                                cGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGc  >  4:175234/1‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGC  >  NC_002947/2260121‑2260411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.