New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2260265	28 (0.660)	3 (0.070)	3/250	NT	8.8%	coding (853/2736 nt)	fimV	motility protein FimV
	?	NC_002947	= 2260300	35 (0.860)					coding (888/2736 nt)	fimV	motility protein FimV

GCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCCGCGTCGGCAGCGGCTGCCGATA  >  NC_002947/2260163‑2260445                                                                                                                                          |                                                                                                                                                  gccgccGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTcgc                                                                                                                                             >  5:16174/1‑144 (MQ=255) gccgccGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTcgc                                                                                                                                             <  6:16174/144‑1 (MQ=255) gccgccGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACaa                                                                                                                                        >  3:126684/1‑149 (MQ=255)               aCCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaa                                                                                                                            >  6:137779/1‑147 (MQ=255)                 cGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGc                                                                                                                        >  8:122735/1‑149 (MQ=255)                     gcgTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCa                                                                                                                    <  2:24451/149‑1 (MQ=255)                         aTCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCAAGGc                                                                                                                >  2:85927/1‑149 (MQ=255)                          tCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGcc                                                                                                               >  5:102114/1‑149 (MQ=255)                               cAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaa                                                                                                                            >  1:104861/1‑131 (MQ=255)                               cAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaa                                                                                                                            <  2:104861/131‑1 (MQ=255)                                aGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTg                                                                                                         >  5:69778/1‑149 (MQ=255)                                         aCCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAg                                                                                                <  6:69778/149‑1 (MQ=255)                                           cTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATCGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCt                                                                                              <  1:85927/149‑1 (MQ=255)                                                           cGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAgcgc                                                                              >  2:3989/1‑149 (MQ=255)                                                               cAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGa                                                                          <  8:129249/149‑1 (MQ=255)                                                                     tgCCGGTGCATGCCAGGCCAAGGCGTTTAATGACGAGCTTGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGc                                                                    <  5:208109/148‑1 (MQ=255)                                                                          gTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGAt                                                                         <  6:108147/139‑1 (MQ=255)                                                                          gTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGAt                                                                         >  5:108147/1‑139 (MQ=255)                                                                             caggccaggcCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTgaagaa                                                             >  5:145239/1‑148 (MQ=255)                                                                                gccaggccaAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGaacaac                                                         >  7:155705/1‑149 (MQ=255)                                                                                              ttGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgca                                                       <  2:41500‑M2/137‑93 (MQ=255)                                                                                              ttGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgca                                                       >  1:41500‑M2/1‑45 (MQ=255)                                                                                                     aCGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgcagcctcggcggcgccacggc                                    <  1:151350‑M2/149‑112 (MQ=255)                                                                                                      cGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGc                                    >  4:175234/1‑148 (MQ=255)                                                                                                         gcgggCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAgg                                <  3:76812/146‑1 (MQ=255)                                                                                                         gCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAgg                                <  5:151881/149‑1 (MQ=255)                                                                                                         gCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAgg                                <  8:155705/149‑1 (MQ=255)                                                                                                         gCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAgg                                >  4:147035/1‑149 (MQ=255)                                                                                                         gCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAgg                                <  3:80556/149‑1 (MQ=255)                                                                                                          cTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTg                                          <  5:241949/138‑1 (MQ=255)                                                                                                          cTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTg                                          >  6:241949/1‑138 (MQ=255)                                                                                                              ccATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCa                           <  1:3989/149‑1 (MQ=255)                                                                                                                   gCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCcgc                      <  5:137779/149‑1 (MQ=255)                                                                                                                     ccAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACTTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGaacaac                                                         <  1:67399/112‑1 (MQ=255)                                                                                                                     ccAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTgaag                                                               <  8:235849/106‑1 (MQ=255)                                                                                                                     ccAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGaacaac                                                         >  2:67399/1‑112 (MQ=255)                                                                                                                     ccAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCCGCGt                    <  6:145239/149‑1 (MQ=255)                                                                                                                         gAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCCGCGTCgg                 >  8:242577/1‑148 (MQ=255)                                                                                                                                     acCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCCGCGTCGGCAGCGGCTGCCg     >  3:101303/1‑148 (MQ=255)                                                                                                                                     acCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCCGCGTCGGCAGCGGCTGCCGa    <  8:221035/149‑1 (MQ=255)                                                                                                                                       cAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCCGCGTCGGCAGCGGCTGCCGATa  >  4:9112/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                  GCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCGCCTGATCGAGCTGAAGAACAACCAGTTGGCACGCCTGGAAGGCCAGGGCGCAGCCGCGTCGGCAGCGGCTGCCGATA  >  NC_002947/2260163‑2260445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.