New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2406652	43 (1.020)	4 (0.100)	3/246	NT	8.9%	coding (813/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase
	?	NC_002947	= 2406691	41 (1.020)					coding (852/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase

TGGAGAAGAACGGTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2406501‑2406652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggGTCCTCGAAACGCAGGCTCTGCGCCAGCAGTTTCAGCGGCCGCTGGTAGTCATCCTCTTCGTTGAGCAATTGCGGATAGAACGGGTCATTGCTGATCCCTGCCCCCAAAGCCGCCATGTGCACACGCAACTGATGGGTCTTGCCGGT  <  NC_002947/2406691‑2406545                                                                                                                                                                                                                                                                                                             TGGAGAAGGACGGTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAG                                                                                                                                                        >  6:44345/1‑149   GAGAAGAACGGTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATGAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCG                                                                                                                                                      >  1:221206/1‑149   GAGAAGAACGGTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCG                                                                                                                                                      >  3:93288/1‑149                                                   AAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGGTCCTCGAAACGCAGGCTCTGCGCCAGCAGTTTCAGCGGCCGCTGGT                                                                                                      <  3:135069/149‑1                                                   AAGACCCAGCAGTTGCGGGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGGTCCTCGAAACGCAGGCTCTGCGCCAGCAGTTGCAGCGGCCGCGGGT                                                                                                      <  3:135070/149‑1                                                                             GGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGGTCCTCGAAACGCAGGCTCTGCGCCAGCAGTTTCAGCGGCCGCTGGTAGTCA                                                                                                 <  3:94411/128‑1                                                                             GGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGGTCCTCGAAACGCAGGCTCTGCGCCAGCAGTTTCAGCGGCCGCTGGTAGTCA                                                                                                 >  4:94411/1‑128                                                                                                                                                       GGGTCCTCGAAACGCAGGCTCTGCGCCAGCAGTTTCAGCGGCCGCTGGTAGTCATCCTCTTCGTTGAGCAATTGCGGATAGAACGGGTCATTGCTGATCCCTGCCCCCAAAGCCGCCATGTGCACACGCAACTGATGGGTCTTGCCGGT  <  8:90397/149‑1                                                                                                                                                                                                                                                                                                             TGGAGAAGAACGGTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2406501‑2406652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggGTCCTCGAAACGCAGGCTCTGCGCCAGCAGTTTCAGCGGCCGCTGGTAGTCATCCTCTTCGTTGAGCAATTGCGGATAGAACGGGTCATTGCTGATCCCTGCCCCCAAAGCCGCCATGTGCACACGCAACTGATGGGTCTTGCCGGT  <  NC_002947/2406691‑2406545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.