New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2406652	43 (1.020)	4 (0.100)	3/246	NT	8.9%	coding (813/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase
	?	NC_002947	= 2406691	41 (1.020)					coding (852/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase

GTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCACC  >  NC_002947/2406513‑2406799                                                                                                                                            |                                                                                                                                                    gTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGaaa                                                                                                                                            >  3:45158/1‑149 (MQ=255)       gATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAActgctg                                                                                                                                      <  4:93288/149‑1 (MQ=255)                          gCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGc                                                                                                                         <  4:196133/143‑1 (MQ=255)                          gCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGc                                                                                                                         >  3:196133/1‑143 (MQ=255)                          gCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTc                                                                                                                    >  2:211101/1‑148 (MQ=255)                            cAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAg                                                                                                                 <  1:211101/149‑1 (MQ=255)                              gTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGa                                                                                                               <  2:221206/149‑1 (MQ=255)                                 aCCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACcc                                                                                                            <  8:90397‑M2/149‑3 (MQ=255)                                       aaGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGgtcctcgaaacgcaggctctgcgccagcagtttcagcggccgctggt                                                                                                      <  3:135069‑M1/149‑48 (MQ=255)                                       aaGACCCAGCAGTTGCGGGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGgtcctcgaaacgcaggctctgcgccagcagttgcagcggccgcgggt                                                                                                      <  3:135070‑M1/149‑48 (MQ=255)                                               tCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCa                                                                                                 >  7:65657/1‑146 (MQ=255)                                                 aGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAagag                                                                                            <  3:207058/149‑1 (MQ=255)                                                      cGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCt                                                                                        <  7:65829/148‑1 (MQ=255)                                                       gtgtGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTAc                                                                                      >  1:10762/1‑149 (MQ=255)                                                               aTGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTa                                                                                       >  4:23023/1‑140 (MQ=255)                                                               aTGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTa                                                                                       <  3:23023/140‑1 (MQ=255)                                                                tGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGc                                                                             >  7:7983/1‑149 (MQ=255)                                                                 ggcggcTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGgtcctcgaaacgcaggctctgcgccagcagtttcagcggccgctggtagtca                                                                                                 <  3:94411‑M1/128‑53 (MQ=255)                                                                 ggcggcTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGgtcctcgaaacgcaggctctgcgccagcagtttcagcggccgctggtagtca                                                                                                 >  4:94411‑M1/1‑76 (MQ=255)                                                                   cggcTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGc                                                                          >  2:42477/1‑149 (MQ=255)                                                                           ggggCAGGGAGCAGCAATGAACCTGTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGtt                                                                  <  3:193890/149‑1 (MQ=255)                                                                                aGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACt                                                             <  5:44345/149‑1 (MQ=255)                                                                                  ggATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTgg                                                           >  2:9371/1‑149 (MQ=255)                                                                                        gCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGAc                                                              <  8:208550/140‑1 (MQ=255)                                                                                        gCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGAc                                                              >  7:208550/1‑140 (MQ=255)                                                                                        gCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAacac                                                     <  1:9371/149‑1 (MQ=255)                                                                                          aaTGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAg                                                   >  6:255178/1‑149 (MQ=255)                                                                                                ccGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCg                                             <  7:90397/149‑1 (MQ=255)                                                                                                   ttCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGc                                          <  5:255178/149‑1 (MQ=255)                                                                                                       aTCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGc                                      >  2:87157/1‑149 (MQ=255)                                                                                                        tCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGcc                                     >  3:23142/1‑149 (MQ=255)                                                                                                         ccGGAATTGATCAACGAAGAGGATTACTACCAGCGGGCGCTTAAACTGCTTGGTCAGAGCCTGAGTTTCTAGGAGCCGCTGAGTGGAAAAGAGCGATACTTCGAGAGCCTCTTGCGTTTGGACTGGTAACACAGCAAGCGGGCTTGcc                                     <  8:65657/148‑1 (MQ=255)                                                                                                          cGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCt                                    <  4:45158/148‑1 (MQ=255)                                                                                                           gCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCCCGCTTGctgtg                                  >  4:33521/1‑145 (MQ=255)                                                                                                            cAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCggg                                           <  8:44010/139‑1 (MQ=255)                                                                                                            cAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCggg                                           >  7:44010/1‑139 (MQ=255)                                                                                                            cAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCCCGCTTGctgtgt                                 <  3:33521/149‑6 (MQ=255)                                                                                                                  cTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAggg                           >  6:148981/1‑149 (MQ=255)                                                                                                                   tCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAgggg                          >  7:102968/1‑149 (MQ=255)                                                                                                                     aaCGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGgggcg                        >  1:174985/1‑149 (MQ=255)                                                                                                                     aaCGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTCGCGCAGAGCCTGCGTTTCGACGACCCCCAGACTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGCCTGGTAACACAGCAAGCGGGCTTGCCTGATAAAGgagcg                        >  4:214101/1‑149 (MQ=255)                                                                                                                      aCGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGgggcgg                       <  8:7983/149‑1 (MQ=255)                                                                                                                          agagGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCt                   <  6:32698/149‑1 (MQ=255)                                                                                                                                tGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgcc                                  <  3:94411‑M2/128‑77 (MQ=255)                                                                                                                                tGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgcc                                  >  4:94411‑M2/1‑52 (MQ=255)                                                                                                                                tGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGc             <  1:42477/149‑1 (MQ=255)                                                                                                                                    tACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCgaga                                                                               >  4:141420/1‑79 (MQ=255)                                                                                                                                    tACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCgaga                                                                               <  3:141420/79‑1 (MQ=255)                                                                                                                                     aCCCGCGGCCGCTGCAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgccatgtgcacccgcaactgctgggtctt        <  3:135070‑M2/149‑103 (MQ=255)                                                                                                                                     aCCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgccatgtgcacacgcaactgatgggtctt        <  3:135069‑M2/149‑103 (MQ=255)                                                                                                                                      ccAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAAtt        <  2:10762/148‑1 (MQ=255)                                                                                                                                      ccAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAAtt        <  4:23142/148‑1 (MQ=255)                                                                                                                                         gCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCa    <  3:214101/149‑1 (MQ=255)                                                                                                                                           gggtcctcgaaacgcaggctctgcgccagcagtttcagcggccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgccatgtgcacacgcaactgatgggtcttgccggt  <  8:90397‑M1/149‑148 (MQ=255)                                                                                                                                            |                                                                                                                                                    GTGAGCGATGGCGCTATGGGCTGTCGCCAGTGACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCACC  >  NC_002947/2406513‑2406799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.