New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2406652	43 (1.020)	4 (0.100)	3/246	NT	8.9%	coding (813/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase
	?	NC_002947	= 2406691	41 (1.020)					coding (852/906 nt)	PP_2110	ribosomal large subunit pseudouridine synthase

ACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCACCCGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGG  >  NC_002947/2406545‑2406836                                                                                                                                                   |                                                                                                                                                  aCCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACcc                                                                                                                                                 <  8:90397‑M2/149‑3 (MQ=255)               tCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCa                                                                                                                                      >  7:65657/1‑146 (MQ=255)                 aGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAagag                                                                                                                                 <  3:207058/149‑1 (MQ=255)                      cGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCt                                                                                                                             <  7:65829/148‑1 (MQ=255)                       gtgtGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTAc                                                                                                                           >  1:10762/1‑149 (MQ=255)                               aTGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTa                                                                                                                            >  4:23023/1‑140 (MQ=255)                               aTGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTa                                                                                                                            <  3:23023/140‑1 (MQ=255)                                tGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGc                                                                                                                  >  7:7983/1‑149 (MQ=255)                                   cggcTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGc                                                                                                               >  2:42477/1‑149 (MQ=255)                                           ggggCAGGGAGCAGCAATGAACCTGTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGtt                                                                                                       <  3:193890/149‑1 (MQ=255)                                                aGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACt                                                                                                  <  5:44345/149‑1 (MQ=255)                                                  ggATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTgg                                                                                                >  2:9371/1‑149 (MQ=255)                                                        gCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGAc                                                                                                   >  7:208550/1‑140 (MQ=255)                                                        gCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGAc                                                                                                   <  8:208550/140‑1 (MQ=255)                                                        gCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAacac                                                                                          <  1:9371/149‑1 (MQ=255)                                                          aaTGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAg                                                                                        >  6:255178/1‑149 (MQ=255)                                                                ccGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCg                                                                                  <  7:90397/149‑1 (MQ=255)                                                                   ttCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGc                                                                               <  5:255178/149‑1 (MQ=255)                                                                       aTCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGc                                                                           >  2:87157/1‑149 (MQ=255)                                                                        tCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGcc                                                                          >  3:23142/1‑149 (MQ=255)                                                                         ccGGAATTGATCAACGAAGAGGATTACTACCAGCGGGCGCTTAAACTGCTTGGTCAGAGCCTGAGTTTCTAGGAGCCGCTGAGTGGAAAAGAGCGATACTTCGAGAGCCTCTTGCGTTTGGACTGGTAACACAGCAAGCGGGCTTGcc                                                                          <  8:65657/148‑1 (MQ=255)                                                                          cGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCt                                                                         <  4:45158/148‑1 (MQ=255)                                                                           gCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCCCGCTTGctgtg                                                                       >  4:33521/1‑145 (MQ=255)                                                                            cAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCggg                                                                                >  7:44010/1‑139 (MQ=255)                                                                            cAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCggg                                                                                <  8:44010/139‑1 (MQ=255)                                                                            cAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCCCGCTTGctgtgt                                                                      <  3:33521/149‑6 (MQ=255)                                                                                  cTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAggg                                                                >  6:148981/1‑149 (MQ=255)                                                                                   tCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAgggg                                                               >  7:102968/1‑149 (MQ=255)                                                                                     aaCGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGgggcg                                                             >  1:174985/1‑149 (MQ=255)                                                                                     aaCGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTCGCGCAGAGCCTGCGTTTCGACGACCCCCAGACTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGCCTGGTAACACAGCAAGCGGGCTTGCCTGATAAAGgagcg                                                             >  4:214101/1‑149 (MQ=255)                                                                                      aCGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGgggcgg                                                            <  8:7983/149‑1 (MQ=255)                                                                                          agagGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCt                                                        <  6:32698/149‑1 (MQ=255)                                                                                                tGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgcc                                                                       <  3:94411‑M2/128‑77 (MQ=255)                                                                                                tGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgcc                                                                       >  4:94411‑M2/1‑52 (MQ=255)                                                                                                tGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGc                                                  <  1:42477/149‑1 (MQ=255)                                                                                                    tACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCgaga                                                                                                                    >  4:141420/1‑79 (MQ=255)                                                                                                    tACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCgaga                                                                                                                    <  3:141420/79‑1 (MQ=255)                                                                                                     aCCCGCGGCCGCTGCAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgccatgtgcacccgcaactgctgggtctt                                             <  3:135070‑M2/149‑103 (MQ=255)                                                                                                     aCCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACccgctggtagtcatcctcttcgttgagcaattgcggatagaacgggtcattgctgatccctgcccccaaagccgccatgtgcacacgcaactgatgggtctt                                             <  3:135069‑M2/149‑103 (MQ=255)                                                                                                      ccAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAAtt                                             <  4:23142/148‑1 (MQ=255)                                                                                                      ccAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAAtt                                             <  2:10762/148‑1 (MQ=255)                                                                                                         gCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCa                                         <  3:214101/149‑1 (MQ=255)                                                                                                               gCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTc                                                    <  6:79301/132‑1 (MQ=255)                                                                                                               gCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTc                                                    >  5:79301/1‑132 (MQ=255)                                                                                                               gCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCACccgcc                                   >  5:61043/1‑149 (MQ=255)                                                                                                                                     cTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCACCCGCCGTTCACCGTTGCTGCCGCTAcc             >  1:163315/1‑149 (MQ=255)                                                                                                                                                ggACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCACCCGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCggg  <  8:102968/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  ACCGGCAAGACCCATCAGTTGCGTGTGCACATGGCGGCTTTGGGGGCAGGGATCAGCAATGACCCGTTCTATCCGCAATTGCTCAACGAAGAGGATGACTACCAGCGGCCGCTGAAACTGCTGGCGCAGAGCCTGCGTTTCGAGGACCCGCTGAGTGGCAAAGAGCGCTACTTCGAGAGCCGCTTGCGGTTGGACTGGTAACACAGCAAGCGGGCTTGCCTGCTAAAGGGGCGGGCCTGCTCGCCAATTTCCACCCGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGG  >  NC_002947/2406545‑2406836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.