| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2453996 = | 30 (0.710) | 3 (0.070) | 3/246 | NT | 10.4% | coding (1123/3450 nt) | mfd | transcription‑repair coupling factor |
| ? | NC_002947 | 2454041 = | 23 (0.570) | coding (1078/3450 nt) | mfd | transcription‑repair coupling factor | |||||
GAAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2454149‑2453996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCA > NC_002947/2454041‑2454143 GAAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCT > 2:95150/1‑149GAAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCT > 2:98890/1‑149 AAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTG < 3:43383/149‑1 CAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGA < 1:157830/140‑1 CAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGA > 2:157830/1‑140 CTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGC > 2:25561/1‑148 CAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCA < 3:104097/105‑1 CAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCA > 4:104097/1‑105 GAAGATTGCTTCGCCCGGCTCAAGCAGTGGCCCCGGGTGGTGGTCAGCAGCGAAGAGCTGGAGCCTGGCGTGGGCCGCGAGCGCTTCCCGGCGCGCGCCCTGCCCAACCTGGCCATCGAGGCCAAGGCCAACCAGCCGCTGGCCGAGCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2454149‑2453996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCA > NC_002947/2454041‑2454143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |