New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2453996 =	30 (0.710)	3 (0.070)	3/246	NT	10.4%	coding (1123/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2454041 =	23 (0.570)					coding (1078/3450 nt)	mfd	transcription‑repair coupling factor

AGGCGCTCGGCACCGGTAATGAAGTCGTCCCAGCCTTCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGC  >  NC_002947/2453848‑2454126                                                                                                                                                      |                                                                                                                                   aGGCGCTCGGCACCGGTAATGAAGTCGTCCCAGCCTTCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGtt                                                                                                                                    >  6:76174/1‑149 (MQ=255)          gCACCGGTAATGAAGTCGTCCCAGCCTTCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTc                                                                                                                           <  4:139787/149‑1 (MQ=255)                gTAATGAAGTCGTCCCAGCCTTCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAg                                                                                                                     <  5:76174/149‑1 (MQ=255)                       agtagtCCCAGCCTTCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTgg                                                                                                              >  6:102282/1‑149 (MQ=255)                         ttgtcCCAGCCTTCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGtt                                                                                                            <  5:102282/147‑1 (MQ=255)                                    ttCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTtggccttggcct                                                                                                 >  1:8974/1‑149 (MQ=255)                                    ttCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTtggccttggcct                                                                                                 >  6:212824/1‑149 (MQ=255)                                       gACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGttggccttggc                                                                                                   >  1:1654/1‑144 (MQ=255)                                       gACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGttggccttggc                                                                                                   <  2:1654/144‑1 (MQ=255)                                               tgcttcgcccggctcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTg                                                                                                                                   <  3:104097‑M1/2‑1 (MQ=255)                                               tgcttcgcccggctcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTg                                                                                                                                   >  4:104097‑M1/104‑105 (MQ=255)                                                gcttcgcccggctcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAg                                                                                       >  2:25561‑M1/103‑148 (MQ=255)                                                      cAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCa                                                                               <  6:55471/149‑1 (MQ=255)                                                         cTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAggg                                                                            <  5:129318/149‑1 (MQ=255)                                                            tcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTg                                                                                   >  2:157830‑M1/91‑140 (MQ=255)                                                            tcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTg                                                                                   <  1:157830‑M1/50‑1 (MQ=255)                                                                  ttCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGGTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCg                                                                   >  5:74694/1‑149 (MQ=255)                                                                       gcagcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGttggccttg                                                                                                     >  6:217371/1‑110 (MQ=255)                                                                       gcagcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGttggccttg                                                                                                     <  5:217371/110‑1 (MQ=255)                                                                        cagcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGttggcctt                                                                                                      <  2:263778/108‑1 (MQ=255)                                                                        cagcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGttggcctt                                                                                                      >  1:263778/1‑108 (MQ=255)                                                                          gcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCa                                                                               >  2:68206/1‑129 (MQ=255)                                                                          gcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCa                                                                               <  1:68206/129‑1 (MQ=255)                                                                                           cggcggCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCTGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCTATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAgg                                          <  6:247923/149‑1 (MQ=255)                                                                                           cggcggCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAgg                                          >  6:68476/1‑149 (MQ=255)                                                                                                   cGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAAGCTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTc                                       >  1:44618/1‑145 (MQ=255)                                                                                                   cGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTc                                       <  2:44618/144‑1 (MQ=255)                                                                                                       gATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTc                              >  4:219318/1‑149 (MQ=255)                                                                                                              cAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACg                                               >  4:202567/1‑125 (MQ=255)                                                                                                              cAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACg                                               <  3:202567/125‑1 (MQ=255)                                                                                                              cAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGctgctg                       <  5:212824/149‑1 (MQ=255)                                                                                                                   aaGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGaccac                  >  1:98890/1‑149 (MQ=255)                                                                                                                   aaGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGaccac                  >  1:95150/1‑149 (MQ=255)                                                                                                                             ggCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGc        <  3:219318/149‑1 (MQ=255)                                                                                                                               ccGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCa      <  5:68476/149‑1 (MQ=255)                                                                                                                                   ggAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGc  >  6:179506/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                   AGGCGCTCGGCACCGGTAATGAAGTCGTCCCAGCCTTCGACGGTATGCGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGC  >  NC_002947/2453848‑2454126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.