New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2453996 =	30 (0.710)	3 (0.070)	3/246	NT	10.4%	coding (1123/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2454041 =	23 (0.570)					coding (1078/3450 nt)	mfd	transcription‑repair coupling factor

CGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCT  >  NC_002947/2453895‑2454166                                                                                                                                                    |                                                                                                                              gcttcgcccggctcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAg                                                                                                                               >  2:25561‑M1/103‑148 (MQ=255)       cAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCa                                                                                                                       <  6:55471/149‑1 (MQ=255)          cTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAggg                                                                                                                    <  5:129318/149‑1 (MQ=255)             tcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTg                                                                                                                           <  1:157830‑M1/50‑1 (MQ=255)             tcaagcagtggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaaccTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTg                                                                                                                           >  2:157830‑M1/91‑140 (MQ=255)                   ttCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGGTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCg                                                                                                           >  5:74694/1‑149 (MQ=255)                           gcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCa                                                                                                                       <  1:68206/129‑1 (MQ=255)                           gcTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCa                                                                                                                       >  2:68206/1‑129 (MQ=255)                                            cggcggCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCTGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCTATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAgg                                                                                  <  6:247923/149‑1 (MQ=255)                                            cggcggCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAgg                                                                                  >  6:68476/1‑149 (MQ=255)                                                    cGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAAGCTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTc                                                                               >  1:44618/1‑145 (MQ=255)                                                    cGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTc                                                                               <  2:44618/144‑1 (MQ=255)                                                        gATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTc                                                                      >  4:219318/1‑149 (MQ=255)                                                               cAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACg                                                                                       >  4:202567/1‑125 (MQ=255)                                                               cAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACg                                                                                       <  3:202567/125‑1 (MQ=255)                                                               cAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGctgctg                                                               <  5:212824/149‑1 (MQ=255)                                                                    aaGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGaccac                                                          >  1:98890/1‑149 (MQ=255)                                                                    aaGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGaccac                                                          >  1:95150/1‑149 (MQ=255)                                                                              ggCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGc                                                <  3:219318/149‑1 (MQ=255)                                                                                ccGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCa                                              <  5:68476/149‑1 (MQ=255)                                                                                    ggAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGc                                          >  6:179506/1‑149 (MQ=255)                                                                                                  caacctggccatcgaggccaaggccaaccagccgctggccgagctggccaGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGa                                      >  2:157830‑M2/51‑140 (MQ=255)                                                                                                  caacctggccatcgaggccaaggccaaccagccgctggccgagctggccaGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGa                                      <  1:157830‑M2/90‑1 (MQ=255)                                                                                                      ctggccatcgaggccaaggccaaccagccgctggccgagctggccaGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGc                          >  2:25561‑M2/47‑148 (MQ=255)                                                                                                           CAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCtt                    <  3:43383‑M1/149‑1 (MQ=255)                                                                                                            AGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTc                   >  2:98890‑M1/1‑149 (MQ=255)                                                                                                            AGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTc                   >  2:95150‑M1/1‑149 (MQ=255)                                                                                                             gCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCa                         <  7:254159/142‑1 (MQ=255)                                                                                                             gCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCa                         >  8:254159/1‑142 (MQ=255)                                                                                                                             gTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCt  >  6:53733/1‑149 (MQ=255)                                                                                                                                  ccttggcctCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAAc      <  5:136846/140‑1 (MQ=255)                                                                                                                                  ccttggcctCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAAc      >  6:136846/1‑140 (MQ=255)                                                                                                                                                  caGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCa                         >  4:104097‑M2/3‑105 (MQ=255)                                                                                                                                                  caGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCa                         <  3:104097‑M2/103‑1 (MQ=255)                                                                                                                                                    |                                                                                                                              CGGGCGCAGCTTCAGCCGTTCGAGCAGCTCCAGCAGCACTTCCCGGCGGCCCGCTGATTCGGCAGTGAAGAGCACGCGGCCGGGGAA‑CTGGTCGAGGAAGTTGGCCAGCTCGGCCAGCGGCTGGTTGGCCTTGGCCTCGATGGCCAGGTTGGGCAGGGCGCGCGCCGGGAAGCGCTCGCGGCCCACGCCAGGCTCCAGCTCTTCGCTGCTGACCACCACCCGGGGCCACTGCTTGAGCCGGGCGAAGCAATCTTCCACCGGCAGGAACAGCT  >  NC_002947/2453895‑2454166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.