New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2609580 =	40 (0.950)	3 (0.070)	3/252	NT	7.6%	coding (721/2190 nt)	PP_2286	hypothetical protein
	?	NC_002947	2609637 =	34 (0.820)					coding (778/2190 nt)	PP_2286	hypothetical protein

CTTCTGAGCCAGGAGCGCGTCCACCAGGGACTTGTTCCCGGTCTGCGCGATCTGGACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2609639‑2609580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGACCCAAGCGGATGCCG  >  NC_002947/2609637‑2609784                                                                                                                                                                                                                  CTTCTGAGCCAGGAGCGCGTCCACCAGGGACTTGTTCCCGGTCTGCGCGATCTGGACCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGAC                                                               >  3:79517/1‑147  TTCTGAGCCAGGAGCGCGTCCACCAGGGACTTGTTCCCGGTCTGCGCGATCTGGACCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCCCGCGCAGAGCATGGATGAC                                                               >  7:94663/1‑146                         CAGGGACTTGTTCCCGGTCTGCGCGATCTGGACCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGA                                     <  4:79517/149‑1                                                            GAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGACCCAAGCGGATGCCG  >  7:59440/1‑149                                                                                                                                                                                                                  CTTCTGAGCCAGGAGCGCGTCCACCAGGGACTTGTTCCCGGTCTGCGCGATCTGGACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2609639‑2609580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGACCCAAGCGGATGCCG  >  NC_002947/2609637‑2609784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.