New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2609580 =	40 (0.950)	3 (0.070)	3/252	NT	7.6%	coding (721/2190 nt)	PP_2286	hypothetical protein
	?	NC_002947	2609637 =	34 (0.820)					coding (778/2190 nt)	PP_2286	hypothetical protein

CGCCCAGGCCATCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGACCCAAGCGGATGCCG  >  NC_002947/2609492‑2609784                                                                                                                                                  |                                                                                                                                                    cgccCAGGCCATCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGc                                                                                                                                                  >  7:17374/1‑149 (MQ=255)  gtcatccatgctctgcgcgtggaggctcacttcggcagcggtagtgccacccagcgtggacgccacagtggcaccggatgacagcttCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAg                                                                                                                                                   >  3:79517‑M1/88‑147 (MQ=255)  gtcatccatgctctgcgcggggaggctcacttcggcagcggtagtgccacccagcgtggacgccacagtggcaccggatgacagcttCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGaa                                                                                                                                                    >  7:94663‑M1/88‑146 (MQ=255)   cccAGGCCATCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTg                                                                                                                                                >  6:247233/1‑149 (MQ=255)    ccAGGGCATCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGt                                                                                                                                               >  4:151127/1‑149 (MQ=255)    ccAGGCCATCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGt                                                                                                                                               <  8:229281/149‑1 (MQ=255)        gCCATCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATc                                                                                                                                           >  8:67921/1‑149 (MQ=255)           aTCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCgg                                                                                                                                        <  3:151127/149‑1 (MQ=255)            tCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGt                                                                                                                                       <  7:67921/149‑1 (MQ=255)              gCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGc                                                                                                                                     <  2:181928/149‑1 (MQ=255)                     gATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACtgtg                                                                                                                              <  5:23154/149‑1 (MQ=255)                      aTTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCACATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGaa                                                                                                                                                    >  3:252320/1‑126 (MQ=255)                        tCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGc                                                                                                                            <  2:122066/148‑1 (MQ=255)                                   tcgtcCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTg                                                                                                                  <  6:168667/147‑1 (MQ=255)                                      tcCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTgg                                                                                                             <  5:247233/149‑1 (MQ=255)                                                tACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCt                                                                                                   >  1:216290/1‑149 (MQ=255)                                                   tCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGcc                                                                                                >  7:115522/1‑149 (MQ=255)                                                        gACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGt                                                                                           >  5:108761/1‑149 (MQ=255)                                                          cGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGa                                                                                         <  1:142637/149‑1 (MQ=255)                                                               cccGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTc                                                                                    >  4:152114/1‑149 (MQ=255)                                                                 cGCAAGACCACCTTGAACTACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCa                                                                                  <  8:17374/149‑1 (MQ=255)                                                                 cGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGt                                                                                           >  4:5996/1‑140 (MQ=255)                                                                 cGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGt                                                                                           <  3:5996/140‑1 (MQ=255)                                                                     aGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCAcgcg                                                                              <  1:243409/149‑1 (MQ=255)                                                                               gAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCAt                                                                      <  2:216290/147‑1 (MQ=255)                                                                                aacaacACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATgg                                                                    <  8:115522/148‑1 (MQ=255)                                                                                   aacaCGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGa                                                                >  2:68178/1‑149 (MQ=255)                                                                                    acacGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGAc                                                               <  3:152114/149‑1 (MQ=255)                                                                                      cttctgagccaggagcgcgtccaccagggacttgttcccggtctgcgcgatctggaccagAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGAc                                                               >  3:79517‑M2/61‑147 (MQ=255)                                                                                       ttctgagccaggagcgcgtccaccagggacttgttcccggtctgcgcgatctggaccagAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCCCGCGCAGAGCATGGATGAc                                                               >  7:94663‑M2/60‑146 (MQ=255)                                                                                                      cgcAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCgt                                             <  1:68178/149‑1 (MQ=255)                                                                                                              cagggacttgttcccggtctgcgcgatctggaccagAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGgatga                                     <  4:79517‑M2/113‑1 (MQ=255)                                                                                                                gAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTgg                                                                                                                 >  2:242277/1‑71 (MQ=255)                                                                                                                gAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTgg                                                                                                                 <  1:242277/71‑1 (MQ=255)                                                                                                                gAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGatgatg                                   <  6:108761/149‑1 (MQ=255)                                                                                                                    aaGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGAt                               >  2:4924/1‑149 (MQ=255)                                                                                                                         ccTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGcc                          >  7:124375/1‑149 (MQ=255)                                                                                                                              tggACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTc                     <  1:4924/149‑1 (MQ=255)                                                                                                                                  cgcgCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGa                 >  1:2630/1‑149 (MQ=255)                                                                                                                                       tCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGAccc              >  1:34957/1‑147 (MQ=255)                                                                                                                                       tCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGAccc              >  2:191028/1‑147 (MQ=255)                                                                                                                                                 gAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGACCCAAGCGGATGCCg  >  7:59440‑M2/2‑149 (MQ=255)                                                                                                                                                  aaGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCtaa                 >  1:59172/1‑131 (MQ=255)                                                                                                                                                  aaGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCtaa                 <  2:59172/133‑3 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CGCCCAGGCCATCGCCAGTCGATTCAACCTTCTGTCGTCCACCTCGCTACTCCGGGACGATGCCCGCAAGACCACCTTGAACAACACGCTGGTCCAGATCGCGCAGACCGGGAACAAGTCCCTGGTGGACGCGCTCCTGGCTCAGAAGCTGTCATCCGGTGCCACTGTGGCGTCCACGCTGGGTGGCACTACCGCTGCCGAAGTGAGCCTCCACGCGCAGAGCATGGATGACCAGAACCAGCGTAAGCGTGTGGATGATGAGATTCGCCCGTTCCTGACCCAAGCGGATGCCG  >  NC_002947/2609492‑2609784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.