| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2879294 = | 36 (0.850) | 3 (0.080) | 3/244 | NT | 8.7% | coding (771/900 nt) | PP_2534 | LysR family transcriptional regulator |
| ? | NC_002947 | 2879343 = | 29 (0.730) | coding (722/900 nt) | PP_2534 | LysR family transcriptional regulator | |||||
ACCGCGACGGGCATACATTCTCACTGAAGGTGAAAGGGAATATCGAATGCAGCAGTGGTGAGGCGCTGGCGCAGCTGGCCAGGCTGGGCGCCGGCGTGGCGCGTATCGGCACCTTTACCGTGGCCGATGACCTGGCCAACGGGCAACTGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2879448‑2879294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccgATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAGCG > NC_002947/2879343‑2879488 ACCGCGACGGGCATACATTCTCACTGAAGGTGAAAGGGAATATCGAATGCAGCAGTGGTGAGGCGCTGGCGCAGCTGGCCAGGCTGGGCGCCGGCGTGGCGCGTATCGGCACCTTTACCGTGGCCGATGACCTGGCCAACGGGCAACTG > 5:180494/1‑149 TATCGGCACCTTTACCGTGGCCGATGACCTGGCCAACGGGCAACTGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCC > 1:116773/1‑149 TCGGCACCTTTACCGTGGCCGATGACCTGGCCAACGGGCAACTGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTT < 7:191930/124‑1 TCGGCACCTTTACCGTGGCCGATGACCTGGCCAACGGGCAACTGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTT > 8:191930/1‑124 GTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAA < 8:118058/149‑1 TGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAG > 7:32727/1‑149 GATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAGCG > 1:83223/1‑147 ACCGCGACGGGCATACATTCTCACTGAAGGTGAAAGGGAATATCGAATGCAGCAGTGGTGAGGCGCTGGCGCAGCTGGCCAGGCTGGGCGCCGGCGTGGCGCGTATCGGCACCTTTACCGTGGCCGATGACCTGGCCAACGGGCAACTGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2879448‑2879294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccgATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAGCG > NC_002947/2879343‑2879488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |