New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2879294 =	36 (0.850)	3 (0.080)	3/244	NT	8.7%	coding (771/900 nt)	PP_2534	LysR family transcriptional regulator
	?	NC_002947	2879343 =	29 (0.730)					coding (722/900 nt)	PP_2534	LysR family transcriptional regulator

AATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAGCG  >  NC_002947/2879197‑2879488                                                                                                                                                   |                                                                                                                                                  ggcatacattctcactgaaggtgaaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATa                                                                                                                                                 >  1:116773‑M1/98‑149 (MQ=255)      acaAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACgcgc                                                                                                                                            >  3:6204/1‑149 (MQ=255)      acaAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACgcgc                                                                                                                                            <  4:6204/149‑1 (MQ=255)            acccgcacccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCTTGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGcc                                                                                                                                      <  2:14277/149‑1 (MQ=255)             cccgcacccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCg                                                                                                                                     <  3:264910/149‑1 (MQ=255)                    ccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGcc                                                                                                                                >  1:232135/1‑147 (MQ=255)                    ccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGcc                                                                                                                                >  3:111836/1‑147 (MQ=255)                        aaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGa                                                                                                                                                   <  7:191930‑M1/50‑1 (MQ=255)                        aaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGa                                                                                                                                                   >  8:191930‑M1/75‑124 (MQ=255)                            gCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCa                                                                                                                              <  6:145166/141‑1 (MQ=255)                            gCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCa                                                                                                                              >  5:145166/1‑141 (MQ=255)                                         gccgACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAgcg                                                                                                         >  4:231543/1‑149 (MQ=255)                                                    ccGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTcacca                                                                                                 <  4:234906/146‑1 (MQ=255)                                                    ccGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTcacca                                                                                                 >  3:234906/1‑146 (MQ=255)                                                     cGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCActgc                                                                                             >  4:58526/1‑149 (MQ=255)                                                      gCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCActgct                                                                                            <  2:232135/149‑1 (MQ=255)                                                       cATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCActgctg                                                                                           <  3:89171/149‑1 (MQ=255)                                                                         cACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCCCTGCTGCATTCGATATTCCCttt                                                                          >  8:200838/1‑148 (MQ=255)                                                                            ccGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCAcc                                                                      >  3:817/1‑149 (MQ=255)                                                                              gggTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCtt                                                                    >  1:64164/1‑149 (MQ=255)                                                                                   gTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGt                                                                <  3:231543/148‑1 (MQ=255)                                                                                    tAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCa                                                                        <  3:263561/139‑1 (MQ=255)                                                                                    tAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCa                                                                        >  4:263561/1‑139 (MQ=255)                                                                                    tAAGCCTCCAGCAACGGCACCAGGTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTg                                                               <  7:118693/148‑1 (MQ=255)                                                                                      aGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTgag                                                             >  3:101898/1‑148 (MQ=255)                                                                                        ccTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAAt                                                          >  6:180494/1‑149 (MQ=255)                                                                                             aGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATg                                                     >  1:138142/1‑149 (MQ=255)                                                                                               tatcggcacctttaccgtggccgatgacctggccaacgggcaactggtgccgATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGcc                                                   >  1:116773‑M2/53‑149 (MQ=255)                                                                                                 tcggcacctttaccgtggccgatgacctggccaacgggcaactggtgccgATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCttt                                                                          <  7:191930‑M2/74‑1 (MQ=255)                                                                                                 tcggcacctttaccgtggccgatgacctggccaacgggcaactggtgccgATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCttt                                                                          >  8:191930‑M2/51‑124 (MQ=255)                                                                                                        CAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGt                                          >  5:180494‑M1/1‑149 (MQ=255)                                                                                                              cccGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAAc                                     <  4:111836/148‑1 (MQ=255)                                                                                                                     gCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTc                             <  2:64164/149‑1 (MQ=255)                                                                                                                      ccAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACG‑CGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAg                           >  4:7889/1‑149 (MQ=255)                                                                                                                                   cACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAAt                                                          >  2:25658/1‑106 (MQ=255)                                                                                                                                   cACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAAt                                                          <  1:25658/106‑1 (MQ=255)                                                                                                                                             gtgccgATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGaa     <  8:118058‑M2/143‑1 (MQ=255)                                                                                                                                              tgccgATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAg    >  7:32727‑M2/6‑149 (MQ=255)                                                                                                                                                  gATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAgcg  >  1:83223‑M2/2‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                  AATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATGCCCGTCGCGGTGAAACGGCCAGTCAGGCATCGCGCGGCGGAAGTTGAAGCG  >  NC_002947/2879197‑2879488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.