New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2879294 =	36 (0.850)	3 (0.080)	3/244	NT	8.7%	coding (771/900 nt)	PP_2534	LysR family transcriptional regulator
	?	NC_002947	2879343 =	29 (0.730)					coding (722/900 nt)	PP_2534	LysR family transcriptional regulator

GCGACACGAGGCCGCCCCTACTGGCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATG  >  NC_002947/2879148‑2879437                                                                                                                                                   |                                                                                                                                                cgcttcaacttccgccgcgcgatgcctgactggccgtttcaccgcgacgggcatacattctcactgaaggtgaaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatc                                                                                                                                                 >  1:83223‑M1/147‑147 (MQ=255)  cgACACGAGGCCGCCCCTACTTGCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGc                                                                                                                                              <  5:262228/149‑1 (MQ=255)   cttcaacttccgccgcgcgatgcctgactggccgtttcaccgcgacgggcatacattctcactgaaggtgaaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCa                                                                                                                                             >  7:32727‑M1/145‑149 (MQ=255)    ttcaacttccgccgcgcgatgcctgactggccgtttcaccgcgacgggcatacattctcactgaaggtgaaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCAc                                                                                                                                            <  8:118058‑M1/6‑1 (MQ=255)        gAGGCCGCCCCTACTGGCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGt                                                                                                                                        >  8:92202/1‑149 (MQ=255)               ccccTACTGGCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCCTGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGt                                                                                                                                 >  1:14277/1‑149 (MQ=255)                 ccTACTGGCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTg                                                                                                                               <  1:152605/149‑1 (MQ=255)                 ccTACTGGCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTg                                                                                                                               <  3:205019/149‑1 (MQ=255)                        gCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAg                                                                                                                          <  7:92202/147‑1 (MQ=255)                          caccaGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAg                                                                                                                          >  8:179732/1‑145 (MQ=255)                          caccaGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAg                                                                                                                          <  7:179732/145‑1 (MQ=255)                             caGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCg                                                                                                                   >  4:89171/1‑149 (MQ=255)                                          caccaGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTaaa                                                                                                        <  6:54624/147‑1 (MQ=255)                                           accaGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACg                                                                                                             <  6:59345/141‑1 (MQ=255)                                           accaGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACg                                                                                                             >  5:59345/1‑141 (MQ=255)                                                  ggcatacattctcactgaaggtgaaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATa                                                                                              >  1:116773‑M1/98‑149 (MQ=255)                                                       acaAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACgcgc                                                                                         <  4:6204/149‑1 (MQ=255)                                                       acaAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACgcgc                                                                                         >  3:6204/1‑149 (MQ=255)                                                         aaaCACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAAc                                                                                                                                                 <  6:99607/91‑1 (MQ=255)                                                         aaaCACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAAc                                                                                                                                                 >  5:99607/1‑91 (MQ=255)                                                             acccgcacccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCTTGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGcc                                                                                   <  2:14277/149‑1 (MQ=255)                                                              cccgcacccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCg                                                                                  <  3:264910/149‑1 (MQ=255)                                                                     ccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGc                                                                                                   >  8:190120/1‑125 (MQ=255)                                                                     ccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGc                                                                                                   <  7:190120/125‑1 (MQ=255)                                                                     ccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGcc                                                                             >  3:111836/1‑147 (MQ=255)                                                                     ccgTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGcc                                                                             >  1:232135/1‑147 (MQ=255)                                                                         aaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGa                                                                                                <  7:191930‑M1/50‑1 (MQ=255)                                                                         aaagggaatatcgaatgcagcagtggtgaggcgctggcgcagctggccaggctgggcgccggcgtggcgcgtatCGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGa                                                                                                >  8:191930‑M1/75‑124 (MQ=255)                                                                             gCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCa                                                                           >  5:145166/1‑141 (MQ=255)                                                                             gCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCa                                                                           <  6:145166/141‑1 (MQ=255)                                                                                          gccgACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAgcg                                                      >  4:231543/1‑149 (MQ=255)                                                                                                     ccGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTcacca                                              <  4:234906/146‑1 (MQ=255)                                                                                                     ccGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTcacca                                              >  3:234906/1‑146 (MQ=255)                                                                                                      cGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCActgc                                          >  4:58526/1‑149 (MQ=255)                                                                                                       gCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCActgct                                         <  2:232135/149‑1 (MQ=255)                                                                                                        cATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCActgctg                                        <  3:89171/149‑1 (MQ=255)                                                                                                                          cACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCCCTGCTGCATTCGATATTCCCttt                       >  8:200838/1‑148 (MQ=255)                                                                                                                             ccGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCAcc                   >  3:817/1‑149 (MQ=255)                                                                                                                               gggTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCtt                 >  1:64164/1‑149 (MQ=255)                                                                                                                                    gTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGt             <  3:231543/148‑1 (MQ=255)                                                                                                                                     tAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCa                     <  3:263561/139‑1 (MQ=255)                                                                                                                                     tAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCa                     >  4:263561/1‑139 (MQ=255)                                                                                                                                     tAAGCCTCCAGCAACGGCACCAGGTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTg            <  7:118693/148‑1 (MQ=255)                                                                                                                                       aGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTgag          >  3:101898/1‑148 (MQ=255)                                                                                                                                         ccTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAAt       >  6:180494/1‑149 (MQ=255)                                                                                                                                              aGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATg  >  1:138142/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                GCGACACGAGGCCGCCCCTACTGGCCACCAGATAGCTGCTCCACCAGAAAATCCACAAACACCCGCACCCGTGCCGGCATCGCCGGGCCGCCGACGAACACCGCATGAATCGGTTCCCGATCACCCGGGTTGTAAGCCTCCAGCAACGGCACCAGTTGCCCGTTGGCCAGGTCATCGGCCACGGTAAAGGTGCCGATACGCGCCACGCCGGCGCCCAGCCTGGCCAGCTGCGCCAGCGCCTCACCACTGCTGCATTCGATATTCCCTTTCACCTTCAGTGAGAATGTATG  >  NC_002947/2879148‑2879437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.