New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3276877	46 (1.090)	3 (0.070)	3/250	NT	5.7%	intergenic (‑182/+101)	PP_2875/ampC	hypothetical protein/beta‑lactamase
	?	NC_002947	= 3276906	54 (1.320)					intergenic (‑211/+72)	PP_2875/ampC	hypothetical protein/beta‑lactamase

AGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3276769‑3276877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACGCAGGCCGTCCGTGGAGAGGGAAACTGTCCAAAAGGCAGCGTGAGAAAGCCCCTGTTGCGATGC  <  NC_002947/3276906‑3276759                                                                                                                                                                                                                                                                   AGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGA                                                                                                              <  1:164300/149‑1           TCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCC                                                                                                                  <  3:65733/135‑1           TCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCC                                                                                                                  >  4:65733/1‑135                                                                                                            CGCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACGCAGGCCGTCCGTGGAGAGGGAAACTGTCCAAAAGGCAGCGTGAGAAAGCCCCTGTTGCGATG   <  2:162897/149‑1                                                                                                             GCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACGCAGGCCGTCCGTGGAGAGGGAAACTGTCCAAAAGGCAGCGTGAGAAAGCCCCTGTTGCGATGC  <  6:104591/149‑1                                                                                                                                                                                                                                                                   AGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3276769‑3276877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgCCGTTCATCGCGCTTGGGCATGATGAAGCCGTCTCCCCGATCGGGAGCGGTGGCAAGGGTGTTCCAGACGGCCTGCGCGGTAACGCAGGCCGTCCGTGGAGAGGGAAACTGTCCAAAAGGCAGCGTGAGAAAGCCCCTGTTGCGATGC  <  NC_002947/3276906‑3276759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.