New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3276877 | 46 (1.090) | 3 (0.070) | 3/250 | NT | 5.7% | intergenic (‑182/+101) | PP_2875/ampC | hypothetical protein/beta‑lactamase |
? | NC_002947 | = 3276906 | 54 (1.320) | intergenic (‑211/+72) | PP_2875/ampC | hypothetical protein/beta‑lactamase |
GCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAACCCGCGCCTGGTT > NC_002947/3276734‑3277025 | gcgcACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCtt > 2:213370/1‑148 (MQ=255) gcACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTtcat > 6:112557/1‑149 (MQ=255) ccAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGcc > 4:133830/1‑149 (MQ=255) ctACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGa < 1:213370/149‑1 (MQ=255) gCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGc < 6:104591‑M2/149‑2 (MQ=255) cATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGcg < 2:162897‑M2/149‑3 (MQ=255) gCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCaa < 6:213207/149‑1 (MQ=255) gCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCaa < 7:222381/149‑1 (MQ=255) aGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGccgttcatcgcgcttgggcatgatgaagccgtctccccga < 1:164300‑M1/149‑41 (MQ=255) ggCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTg < 1:162897/149‑1 (MQ=255) tcACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGccgttcatcgcgcttgggcatgatgaagccgtctcc > 4:65733‑M1/1‑99 (MQ=255) tcACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGccgttcatcgcgcttgggcatgatgaagccgtctcc < 3:65733‑M1/135‑37 (MQ=255) tcACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAg > 1:74593/1‑145 (MQ=255) tcACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAg < 2:74593/145‑1 (MQ=255) ttttGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCt > 5:212200/1‑149 (MQ=255) gTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACAtt < 6:84666/149‑1 (MQ=255) tttCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTc > 3:244829/1‑149 (MQ=255) ccTCTCCACGGACGGCCTGCGTTACCGCGCTGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTc < 5:16903/149‑1 (MQ=255) ccTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTc > 3:93272/1‑149 (MQ=255) ctctCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTtc < 7:151931/79‑1 (MQ=255) ctctCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTtc > 8:151931/1‑79 (MQ=255) cACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGTAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGtttt < 5:112557/148‑1 (MQ=255) acggacggCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGt < 5:104591/149‑1 (MQ=255) ggacggCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGt > 7:110450/1‑139 (MQ=255) ggacggCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGt < 8:110450/139‑1 (MQ=255) ggacggCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTcc < 5:230318/149‑1 (MQ=255) gacggCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTcc > 1:80026/1‑148 (MQ=255) gCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATc > 8:213152/1‑147 (MQ=255) gCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATc < 7:213152/147‑1 (MQ=255) gcggtaacgcAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCCTGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAAcg > 5:16076/8‑149 (MQ=255) gTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGt > 2:145504/1‑102 (MQ=255) gTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGt < 1:145504/102‑1 (MQ=255) ttACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAAcgc < 3:133830/149‑1 (MQ=255) cgcgCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGc > 2:253002/1‑149 (MQ=255) cAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCCTGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTta < 6:16076/149‑1 (MQ=255) cGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGc < 1:253002/149‑1 (MQ=255) tCTGGAAAACCCTTCCCACAGCTCCCGATCGGGGAGACGTCTTCATCATGCCAAAGCGCGATGAAAGGCGACAACCATTTTGTAGTGAATATTTATGCTCACTACATTCTCTCGTTTTGTCCTACAATCAACGCGAGCGTTATAAccct > 8:110019/1‑148 (MQ=255) tGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCgg > 4:255806/1‑148 (MQ=255) gAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCgg < 3:255806/146‑1 (MQ=255) gAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGa > 1:251098/1‑147 (MQ=255) cacCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGa < 6:233539/149‑1 (MQ=255) ttGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGtt > 1:178131/1‑129 (MQ=255) ttGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGtt < 2:178131/129‑1 (MQ=255) ttGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTc > 4:110174/1‑148 (MQ=255) ccACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAg > 6:43639/1‑149 (MQ=255) ccGCTCCCGATCGGGGAGACGGATTCATCATGCCCAAGCGCGATGAACGCCGTCAACCAATATGTAGTGAAGATTTTTGCTCACTACATTCTGTCGTTTTCTCCGACAATCAAAGCGAGCGTTATAAGCAGGAAAGGATGTCGAAgccg > 3:139927/1‑149 (MQ=255) cTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCt > 7:217209/1‑149 (MQ=255) ccGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGcc < 4:221933/124‑1 (MQ=255) ccGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCtt < 6:212200/147‑1 (MQ=255) cGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAggcggc > 4:40979/1‑144 (MQ=255) cGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAggcggc < 3:40979/144‑1 (MQ=255) aTCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAAcc < 4:244829/149‑1 (MQ=255) tCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGcgtctccccgatcgggagcggtggcaagggtgttccagacggcctgcgcggtaacgcaggccgtccgtggagagggaaactgtccaaaaggcagcgtgagaaagcccct < 1:164300‑M2/149‑110 (MQ=255) gggAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAACCcgcg > 4:137546/1‑149 (MQ=255) ggAGACGGCTTCATCATGCCCAAGCGCGATGAACGGcgtctccccgatcgggagcggtggcaagggtgttccagacggcctgcgcggtaacgcaggccgtccgtggagagggaaactgtccaaaaggcagcgtga > 4:65733‑M2/1‑36 (MQ=255) ggAGACGGCTTCATCATGCCCAAGCGCGATGAACGGcgtctccccgatcgggagcggtggcaagggtgttccagacggcctgcgcggtaacgcaggccgtccgtggagagggaaactgtccaaaaggcagcgtga < 3:65733‑M2/135‑100 (MQ=255) ggAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAACCCgcgc < 3:110174/149‑1 (MQ=255) agaCGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAACCCGCGCCt > 6:12455/1‑149 (MQ=255) aCGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAACCCGCGCCTgg > 1:26296/1‑149 (MQ=255) cGccgttcatcgcgcttgggcatgatgaagccgtctccccgatcgggagcggtggcaagggtgttccagacggcctgcgcggtaacgcaggccgtccgtggagagggaaactgtccaaaaggcagcgtgagaaagcccctgttgcgatg < 2:162897‑M1/149‑148 (MQ=255) ggCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAACCCGCGCCTGGtt < 8:217209/149‑1 (MQ=255) gccgttcatcgcgcttgggcatgatgaagccgtctccccgatcgggagcggtggcaagggtgttccagacggcctgcgcggtaacgcaggccgtccgtggagagggaaactgtccaaaaggcagcgtgagaaagcccctgttgcgatgc < 6:104591‑M1/149‑149 (MQ=255) | GCGCACTACCAAGGCTGCTACAGCAGCATCGCAACAGGGGCTTTCTCACGCTGCCTTTTGGACAGTTTCCCTCTCCACGGACGGCCTGCGTTACCGCGCAGGCCGTCTGGAACACCCTTGCCACCGCTCCCGATCGGGGAGACGGCTTCATCATGCCCAAGCGCGATGAACGGCGTCAACCATTTTGTAGTGAATATTTTTGCTCACTACATTCTGTCGTTTTGTCCGACAATCAACGCGAGCGTTATAAGCCGGAAAGGATGTCGAAGGCGGCTTGAACCCGCGCCTGGTT > NC_002947/3276734‑3277025 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |