| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3305527 | 28 (0.660) | 3 (0.080) | 3/244 | NT | 9.3% | coding (644/1392 nt) | PP_2906 | sensor histidine kinase |
| ? | NC_002947 | = 3305565 | 32 (0.800) | coding (606/1392 nt) | PP_2906 | sensor histidine kinase | |||||
TGGCGAATACGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3305374‑3305527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtcgcCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGACGAACTGGACATGCTTGCGGCGATCGTCAATGCCATGCTCGACCGTATCGAACGGCTGATGCATGAGGTCAAGGGCGTGTGCGACAACATTGCCCATGACCT < NC_002947/3305565‑3305422 TGGCGAATACGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTC > 3:11660/1‑149TGGCGAATACGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTC > 6:64362/1‑149 TACGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTT > 5:200539/1‑141 TACGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTT < 6:200539/141‑1 CAGGTCATGGTCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGA < 4:11660/149‑1 GCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGAC > 7:143412/1‑129 GCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGAC < 8:143412/129‑1 CGTCGCCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGACGAACTGGACATGCTTGCGGCGATCGTCAATGCCATGCTCGACCGTATCGAACGGCTGATGCATGAGGTCAAGGGCGTGTGCGACAACATTGCCCATGACC > 8:72542/1‑149 GTCGCCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGACGAACTGGACATGCTTGCGGCGATCGTCAATGCCATGCTCGACCGTATCGAACGGCTGATGCATGAGGTCAAGGGCGTGTGCGACAACATTGCCCATGACCT < 3:194290/149‑1 TCGCCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGACGAACTGGACATGCTTGCGGCGATCGTCAATGCCATGCTCGACCGTATCGAACGGCTGATGC < 7:231878/108‑1 TCGCCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGACGAACTGGACATGCTTGCGGCGATCGTCAATGCCATGCTCGACCGTATCGAACGGCTGATGC > 8:231878/1‑108 TGGCGAATACGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3305374‑3305527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtcgcCGGCGACCTGACCCACCGCCTGCCACTGTCGGCCCGCCGCGACGAACTGGACATGCTTGCGGCGATCGTCAATGCCATGCTCGACCGTATCGAACGGCTGATGCATGAGGTCAAGGGCGTGTGCGACAACATTGCCCATGACCT < NC_002947/3305565‑3305422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |