New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3305527	28 (0.660)	3 (0.080)	3/244	NT	9.3%	coding (644/1392 nt)	PP_2906	sensor histidine kinase
	?	NC_002947	= 3305565	32 (0.800)					coding (606/1392 nt)	PP_2906	sensor histidine kinase

CGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCC  >  NC_002947/3305383‑3305672                                                                                                                                                 |                                                                                                                                                  cGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCgcggc                                                                                                                                                <  1:133236/148‑1 (MQ=255)       aGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGAAATGTTGTAGCACACGCCCTTGACCTCATGCATCAGCCGTTGGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGa                                                                                                                                         >  1:187553/1‑149 (MQ=255)            ggCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTg                                                                                                                                    >  5:138283/1‑149 (MQ=255)                            aGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAg                                                                                                                    >  2:74618/1‑149 (MQ=255)                                       cAGGTCATGGTCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCcggcgacctgacccaccgcctgccactgtcggcccgccgcga                                                                                                         <  4:11660‑M1/149‑43 (MQ=255)                                        aGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgac                                                                                                        <  3:194290‑M2/149‑6 (MQ=255)                                         ggTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacg                                                                                                       >  8:72542‑M2/1‑143 (MQ=255)                                             aTGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATc                                                                                                    <  5:64362/148‑1 (MQ=255)                                                ggCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGtt                                                                                                >  2:124839/1‑149 (MQ=255)                                                  cAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGTTCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCg                                                                                              >  5:105752/1‑149 (MQ=255)                                                       ttgtCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctg                                                                                         <  1:124839/149‑1 (MQ=255)                                                            gCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCcggcgacctgacccaccgcctgccactgtcggcccgccgcgac                                                                                                        >  7:143412‑M1/1‑86 (MQ=255)                                                            gCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCcggcgacctgacccaccgcctgccactgtcggcccgccgcgac                                                                                                        <  8:143412‑M1/129‑44 (MQ=255)                                                             cacaCGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctgggcctg                                                                                   <  2:187553/149‑1 (MQ=255)                                                             cacaCGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctgg                                                                                        >  3:207280/1‑144 (MQ=255)                                                             cacaCGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctgg                                                                                        <  4:207280/144‑1 (MQ=255)                                                                  gCCCTTGACCTCATGCATCAGCCTTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCg                                                                                                             <  6:149463/118‑1 (MQ=255)                                                                  gCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCg                                                                                                             >  5:149463/1‑118 (MQ=255)                                                                           cTCATGCATCAGCCGTTCGATACGGGCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGAt                                                                                                     <  4:205642/117‑1 (MQ=255)                                                                              aTGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAg                                                                                                                                >  8:163858/1‑87 (MQ=255)                                                                              aTGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAg                                                                                                                                <  7:163858/87‑1 (MQ=255)                                                                              aTGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACg                                                                    <  1:74618/147‑1 (MQ=255)                                                                              aTGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCt                                                                  >  5:234904/1‑149 (MQ=255)                                                                                gCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcga                                                                                                         <  7:231878‑M2/108‑5 (MQ=255)                                                                                gCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcga                                                                                                         >  8:231878‑M2/1‑104 (MQ=255)                                                                                gCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCtt                                                                 >  1:89122/1‑148 (MQ=255)                                                                                          ttCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCTTGGATCGCCCGTATACGCTTGAGCGGCCTgc                                                      <  1:164498/149‑1 (MQ=255)                                                                                             gATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTgcgc                                                    <  4:251566/148‑1 (MQ=255)                                                                                             gATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTgcgc                                                    <  4:247577/148‑1 (MQ=255)                                                                                               tACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGt                                                 <  6:138283/149‑1 (MQ=255)                                                                                                   gTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTa                                                >  4:66079/1‑146 (MQ=255)                                                                                                   gTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTa                                                <  3:66079/146‑1 (MQ=255)                                                                                                                     gagcgccgcAAGCATGTCCAGTGCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGAGCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAAc                           <  2:180758/146‑1 (MQ=255)                                                                                                                     gATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAAc                           <  2:89122/149‑1 (MQ=255)                                                                                                                           cgcAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGc                                                          >  4:250742/1‑112 (MQ=255)                                                                                                                                  aTGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGt              >  1:192230/1‑149 (MQ=255)                                                                                                                                            cgtcgCcggcgacctgacccaccgcctgccactgtcggcccgccgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgcgacaacattgcccatgacc    >  8:72542‑M1/1‑6 (MQ=255)                                                                                                                                             gtcgCcggcgacctgacccaccgcctgccactgtcggcccgccgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgcgacaacattgcccatgacct   <  3:194290‑M1/149‑145 (MQ=255)                                                                                                                                             gtcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgc                       >  7:143412‑M2/1‑43 (MQ=255)                                                                                                                                             gtcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgc                       <  8:143412‑M2/129‑87 (MQ=255)                                                                                                                                             gtcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGc   <  2:192230/149‑1 (MQ=255)                                                                                                                                              tcgCcggcgacctgacccaccgcctgccactgtcggcccgccgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgc                                           <  7:231878‑M1/108‑105 (MQ=255)                                                                                                                                              tcgCcggcgacctgacccaccgcctgccactgtcggcccgccgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgc                                           >  8:231878‑M1/1‑4 (MQ=255)                                                                                                                                              tcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgcgacaacattgaccatgacctg  <  4:11660‑M2/149‑108 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CGGTACAGCTGGGCGCGCAGGCGGGTCAGCGGTGTGCGCAGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCC  >  NC_002947/3305383‑3305672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.