New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3305527	28 (0.660)	3 (0.080)	3/244	NT	9.3%	coding (644/1392 nt)	PP_2906	sensor histidine kinase
	?	NC_002947	= 3305565	32 (0.800)					coding (606/1392 nt)	PP_2906	sensor histidine kinase

AGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCAGGATGATACGGGTAACCACGAAC  >  NC_002947/3305422‑3305712                                                                                                                                                |                                                                                                                                                    aGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgac                                                                                                                                                <  3:194290‑M2/149‑6 (MQ=255)  ggTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacg                                                                                                                                               >  8:72542‑M2/1‑143 (MQ=255)      aTGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATc                                                                                                                                            <  5:64362/148‑1 (MQ=255)         ggCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGtt                                                                                                                                        >  2:124839/1‑149 (MQ=255)           cAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGTTCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCg                                                                                                                                      >  5:105752/1‑149 (MQ=255)                ttgtCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctg                                                                                                                                 <  1:124839/149‑1 (MQ=255)                      cacaCGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctgggcctg                                                                                                                           <  2:187553/149‑1 (MQ=255)                      cacaCGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctgg                                                                                                                                <  4:207280/144‑1 (MQ=255)                      cacaCGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCggcctgg                                                                                                                                >  3:207280/1‑144 (MQ=255)                           gCCCTTGACCTCATGCATCAGCCTTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCg                                                                                                                                                     <  6:149463/118‑1 (MQ=255)                           gCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCg                                                                                                                                                     >  5:149463/1‑118 (MQ=255)                                    cTCATGCATCAGCCGTTCGATACGGGCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGAt                                                                                                                                             <  4:205642/117‑1 (MQ=255)                                       aTGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACg                                                                                                            <  1:74618/147‑1 (MQ=255)                                       aTGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCt                                                                                                          >  5:234904/1‑149 (MQ=255)                                         gCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcga                                                                                                                                                 >  8:231878‑M2/1‑104 (MQ=255)                                         gCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcga                                                                                                                                                 <  7:231878‑M2/108‑5 (MQ=255)                                         gCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCtt                                                                                                         >  1:89122/1‑148 (MQ=255)                                                   ttCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCTTGGATCGCCCGTATACGCTTGAGCGGCCTgc                                                                                              <  1:164498/149‑1 (MQ=255)                                                      gATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTgcgc                                                                                            <  4:251566/148‑1 (MQ=255)                                                      gATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTgcgc                                                                                            <  4:247577/148‑1 (MQ=255)                                                        tACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGt                                                                                         <  6:138283/149‑1 (MQ=255)                                                            gTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTa                                                                                        >  4:66079/1‑146 (MQ=255)                                                            gTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTa                                                                                        <  3:66079/146‑1 (MQ=255)                                                                              gagcgccgcAAGCATGTCCAGTGCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGAGCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAAc                                                                   <  2:180758/146‑1 (MQ=255)                                                                              gATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAAc                                                                   <  2:89122/149‑1 (MQ=255)                                                                                    cgcAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGc                                                                                                  >  4:250742/1‑112 (MQ=255)                                                                                           aTGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGt                                                      >  1:192230/1‑149 (MQ=255)                                                                                                      gtcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgc                                                               <  8:143412‑M2/129‑87 (MQ=255)                                                                                                      gtcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgc                                                               >  7:143412‑M2/1‑43 (MQ=255)                                                                                                      gtcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGc                                           <  2:192230/149‑1 (MQ=255)                                                                                                       tcgCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGgcgacgaactggacatgcttgcggcgatcgtcaatgccatgctcgaccgtatcgaacggctgatgcatgaggtcaagggcgtgtgcgacaacattgaccatgacctg                                          <  4:11660‑M2/149‑108 (MQ=255)                                                                                                                 ccGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCTGGGATCAGGGTCAGCGAGATGCCCCAGAGCAgg                                >  8:243019/1‑149 (MQ=255)                                                                                                                 ccGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAgg                                >  8:148741/1‑149 (MQ=255)                                                                                                                 ccGAAAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAgg                                >  5:73804/1‑149 (MQ=255)                                                                                                                        tGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCa                         <  6:105752/149‑1 (MQ=255)                                                                                                                           cAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCAGga                      <  1:9559/149‑1 (MQ=255)                                                                                                                                 gTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGc                              <  3:152151/135‑1 (MQ=255)                                                                                                                                 gTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGc                              >  4:152151/1‑135 (MQ=255)                                                                                                                                    ggTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCTGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCAGGATGATACgg              <  7:243019/148‑1 (MQ=255)                                                                                                                                    ggTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCAGGATGATACgg              <  6:234904/148‑1 (MQ=255)                                                                                                                                      tCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGATTGAGCGGCCTGCGCCGTAGCAGGTAACAACCGTCAAAAACCTGGATCAGTGTCATCGAGATTCCCCAGAGCAGGGCGTGCAGGATGATACGGGt            >  1:49531/1‑148 (MQ=255)                                                                                                                                          gTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCAGGATGATACGGGTAAcc        >  2:255618/1‑148 (MQ=255)                                                                                                                                          gTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCAGGATGATACGGGTAAcc        <  1:255618/148‑1 (MQ=255)                                                                                                                                               cGGCGACGATCAGTTCGTCCTGGTCCTGGATCTCCCGTATACGCTTGAGCGGCCTTCGCAGTAGCAGGTACCAAACGTCAAAAACCGGGATCAGGGTAATCGATATGCCACAGAGCAGGGCGTGCAGGATGATACGTGTAACCACGAAc  <  2:49531/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    AGGTCATGGGCAATGTTGTCGCACACGCCCTTGACCTCATGCATCAGCCGTTCGATACGGTCGAGCATGGCATTGACGATCGCCGCAAGCATGTCCAGTTCGTCGCGGCGGGCCGACAGTGGCAGGCGGTGGGTCAGGTCGCCGGCGACGATCAGTTCGGCCTGGGCCTGGATCGCCCGTATACGCTTGAGCGGCCTGCGCCGTAGCAGGTACCAACCGGCAAAACCCGGGATCAGGGTCAGCGAGATGCCCCAGAGCAGGGCGTGCAGGATGATACGGGTAACCACGAAC  >  NC_002947/3305422‑3305712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.