New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3307249	28 (0.660)	5 (0.130)	4/240	NT	16.4%	coding (350/696 nt)	csiR	DNA‑binding transcriptional repressor
	?	NC_002947	= 3307303	25 (0.640)					coding (296/696 nt)	csiR	DNA‑binding transcriptional repressor

TTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3307147‑3307249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggccaTCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTCGCATACATTGGCCAAGGTGGTGGAAGTAAAAACCCGCGAGCAGCGGCTGGATGTGTGGGACGAGCGGCACAAGGCGTTCCATACTGCCATTGCC  <  NC_002947/3307303‑3307164                                                                                                                                                                                                                                                     TTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCATCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTC                                                                                                >  4:198561/1‑149               CGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCATCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTCGCATACATTGGCC                                                                                   >  3:194335/1‑148                  GGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCATCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTCGCATACATTGGCCAAGG                                                                               <  4:194335/149‑1                   GCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCATCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTCGCATACATTGGCCAAGGT                                                                              <  1:62654/149‑1                   GCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCATCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTCGCATACATTGGCCAAGGT                                                                              <  3:198561/149‑1                                                                                               CCTTGGCCATCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTCGCATACATTGGCCAAGGTGGTGGAAGTAAAAACCCGCGAGCAGCGGCTGGATGTGTGGGACGAGCGGCACAAGGCGTTCCATACTGCCATTGCC  >  3:170705/1‑149                                                                                                                                                                                                                                                     TTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3307147‑3307249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggccaTCGAGCGCGGCGATGACGCCTGGGAGGCATCGGTGCTGGCCCACTCGCATACATTGGCCAAGGTGGTGGAAGTAAAAACCCGCGAGCAGCGGCTGGATGTGTGGGACGAGCGGCACAAGGCGTTCCATACTGCCATTGCC  <  NC_002947/3307303‑3307164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.