New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3307249	28 (0.660)	5 (0.130)	4/240	NT	16.4%	coding (350/696 nt)	csiR	DNA‑binding transcriptional repressor
	?	NC_002947	= 3307303	25 (0.640)					coding (296/696 nt)	csiR	DNA‑binding transcriptional repressor

GGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGCCACCAGTTGCGACAGTGCTTCG  >  NC_002947/3307164‑3307449                                                                                                                                            |                                                                                                                                                   ggCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaagg                                                                                                                                           >  3:170705‑M2/1‑140 (MQ=255)          aGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGatca                                                                                                                                  >  3:148548/1‑149 (MQ=255)                gAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCtt                                                                                                                            >  5:250384/1‑149 (MQ=255)                  aCGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTc                                                                                                                           >  7:188117/1‑148 (MQ=255)                   cGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCa                                                                                                                         <  8:74620/149‑1 (MQ=255)                            ccGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGgcgc                                                                                                                <  6:76356/149‑1 (MQ=255)                               cTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCggg                                                                                                             >  5:242020/1‑149 (MQ=255)                                     ccACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGcgtcg                                                                                                        >  7:30344/1‑148 (MQ=255)                                       acacaTCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCTCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGcgtcg                                                                                                        >  3:189953/1‑146 (MQ=255)                                           aTCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGt                                                                                                 >  5:39847/1‑149 (MQ=255)                                                 ccGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTtca                                                                                           <  6:250384/149‑1 (MQ=255)                                                        tCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTtcatctcatc                                                                                    >  2:36924/1‑149 (MQ=255)                                                                             accTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgc                                                               <  1:62654‑M2/149‑86 (MQ=255)                                                                             accTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgc                                                               <  3:198561‑M2/149‑86 (MQ=255)                                                                              ccTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgcc                                                              <  4:194335‑M2/149‑87 (MQ=255)                                                                                ttGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCgg                                                              >  4:256407/1‑147 (MQ=255)                                                                                  ggCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgcctcg                                                           >  3:194335‑M2/1‑59 (MQ=255)                                                                                      aaTGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCttt                                                      >  3:118067/1‑149 (MQ=255)                                                                                      aaTGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCttt                                                      >  3:122189/1‑149 (MQ=255)                                                                                            tGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGc                                                 <  4:122189/148‑1 (MQ=255)                                                                                            tGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGc                                                 <  4:118067/148‑1 (MQ=255)                                                                                               gAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgcctcgggctgcggctccaa                                             >  4:198561‑M2/1‑46 (MQ=255)                                                                                                    ggCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATcgcg                                         <  4:148548/148‑1 (MQ=255)                                                                                                      ccAGCACCGATGCCTCCCAGGCCTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTAGGCGCGGGCGTCGTAGATGTCGTtc                                                                                            >  3:257552/1‑95 (MQ=255)                                                                                                            ccGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAgg                                <  3:256407/149‑1 (MQ=255)                                                                                                            ccGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAgg                                <  8:188117/149‑1 (MQ=255)                                                                                                                   cTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCg                          <  7:216052/148‑1 (MQ=255)                                                                                                                    tCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGc                        >  6:191946/1‑149 (MQ=255)                                                                                                                      ccAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGcc                       >  8:118036/1‑148 (MQ=255)                                                                                                                                  gccgcGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGCCACCAGTTGCGACa          <  1:36924/149‑1 (MQ=255)                                                                                                                                     gcgcTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGCCACCAGTTGCGACAGTg       <  6:39847/149‑1 (MQ=255)                                                                                                                                           gATGGCCAAGGCAATGATCATCGCTTCGAGGTGTGCGCGGGCGTCGGAGATGTCGTTCATCTCATCCAGAGACATGGGCGCTACGCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGCCACCAGTTGCGACAGTGCTTc   <  6:73947/147‑1 (MQ=255)                                                                                                                                           gATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGCCACCAGTTGCGACAGTGCTTcg  <  6:242020/148‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                   GGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTTCTGGCTGATCGCGTTGACCAGGTGCTCGGCCACCAGTTGCGACAGTGCTTCG  >  NC_002947/3307164‑3307449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.