New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3307249	28 (0.660)	5 (0.130)	4/240	NT	16.4%	coding (350/696 nt)	csiR	DNA‑binding transcriptional repressor
	?	NC_002947	= 3307303	25 (0.640)					coding (296/696 nt)	csiR	DNA‑binding transcriptional repressor

CTCGGCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTT  >  NC_002947/3307104‑3307397                                                                                                                                                  |                                                                                                                                                     cTCGGCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATg                                                                                                                                                   >  5:76356/1‑149 (MQ=255)    ggCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGt                                                                                                                                                  <  8:38698/147‑1 (MQ=255)    ggCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTAt                                                                                                                                                <  5:191990/149‑1 (MQ=255)              aaCAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGc                                                                                                                                      <  7:80214/149‑1 (MQ=255)                           gtgcCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGcc                                                                                                                         <  5:58126/149‑1 (MQ=255)                                tGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTCGGCCAGCACCGATGCCTcc                                                                                                                      >  5:73947/1‑147 (MQ=255)                                     cagGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTTTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGt                                                                                                               <  8:109721/149‑1 (MQ=255)                                     cagGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGt                                                                                                                                                  >  8:44463/1‑114 (MQ=255)                                     cagGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGt                                                                                                                                                  <  7:44463/114‑1 (MQ=255)                                        gTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCAt                                                                                                            >  4:206615/1‑149 (MQ=255)                                            ttGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAtcgagcgcggcgatgacgcctgggaggcatcggtgctggcccactc                                                                                                        >  4:198561‑M1/1‑103 (MQ=255)                                              ggAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCTCCACCTTGGCCAATGTATGCGa                                                                                                                                            >  6:251358/1‑111 (MQ=255)                                              ggAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCTCCACCTTGGCCAATGTATGCGa                                                                                                                                            <  5:251358/111‑1 (MQ=255)                                              ggAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATcgcc                                                                                                        <  3:206615/147‑1 (MQ=255)                                                agacGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCgcgc                                                                                                    <  4:211278/146‑1 (MQ=255)                                                          cGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAtcgagcgcggcgatgacgcctgggaggcatcggtgctggcccactcgcatacattggcc                                                                                           >  3:194335‑M1/1‑89 (MQ=255)                                                          cGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTccc                                                                                                                     >  4:168371/1‑122 (MQ=255)                                                          cGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTccc                                                                                                                     <  3:168371/122‑1 (MQ=255)                                                             ggCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAtcgagcgcggcgatgacgcctgggaggcatcggtgctggcccactcgcatacattggccaagg                                                                                       <  4:194335‑M1/149‑64 (MQ=255)                                                             ggCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaagg                                                                                       >  3:170705‑M2/1‑140 (MQ=255)                                                              gCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAtcgagcgcggcgatgacgcctgggaggcatcggtgctggcccactcgcatacattggccaaggt                                                                                      <  1:62654‑M1/149‑65 (MQ=255)                                                              gCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAtcgagcgcggcgatgacgcctgggaggcatcggtgctggcccactcgcatacattggccaaggt                                                                                      <  3:198561‑M1/149‑65 (MQ=255)                                                                      aGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGatca                                                                              >  3:148548/1‑149 (MQ=255)                                                                            gAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCtt                                                                        >  5:250384/1‑149 (MQ=255)                                                                             aaCGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCAc                                                                                                                                <  1:230772/92‑1 (MQ=255)                                                                             aaCGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCAc                                                                                                                                >  2:230772/1‑92 (MQ=255)                                                                              aCGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTc                                                                       >  7:188117/1‑148 (MQ=255)                                                                               cGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCa                                                                     <  8:74620/149‑1 (MQ=255)                                                                                        ccGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGgcgc                                                            <  6:76356/149‑1 (MQ=255)                                                                                         cGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATcgcc                                                                                                        >  1:83219/1‑104 (MQ=255)                                                                                         cGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATcgcc                                                                                                        <  2:83219/104‑1 (MQ=255)                                                                                           cTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCggg                                                         >  5:242020/1‑149 (MQ=255)                                                                                                 ccACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGcgtcg                                                    >  7:30344/1‑148 (MQ=255)                                                                                                   acacaTCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCTCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGcgtcg                                                    >  3:189953/1‑146 (MQ=255)                                                                                                       aTCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGt                                             >  5:39847/1‑149 (MQ=255)                                                                                                             ccGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTtca                                       <  6:250384/149‑1 (MQ=255)                                                                                                                    tCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTtcatctcatc                                >  2:36924/1‑149 (MQ=255)                                                                                                                                         accTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgc           <  1:62654‑M2/149‑86 (MQ=255)                                                                                                                                         accTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgc           <  3:198561‑M2/149‑86 (MQ=255)                                                                                                                                          ccTTGGCCAtcgagcgcggcgatgacgcctgggaggcatcggtgctggcccactcgcatacattggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgcc          >  3:170705‑M1/1‑9 (MQ=255)                                                                                                                                          ccTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgcc          <  4:194335‑M2/149‑87 (MQ=255)                                                                                                                                            ttGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCgg          >  4:256407/1‑147 (MQ=255)                                                                                                                                              ggCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGAtggccaaggtggtggaagtaaaaacccgcgagcagcggctggatgtgtgggacgagcggcacaaggcgttccatactgccattgcctcg       >  3:194335‑M2/1‑59 (MQ=255)                                                                                                                                                  aaTGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCttt  >  3:118067/1‑149 (MQ=255)                                                                                                                                                  aaTGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCttt  >  3:122189/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CTCGGCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGGCAATGGCAGTATGGAACGCCTTGTGCCGCTCGTCCCACACATCCAGCCGCTGCTCGCGGGTTTTTACTTCCACCACCTTGGCCAATGTATGCGAGTGGGCCAGCACCGATGCCTCCCAGGCGTCATCGCCGCGCTCGATGGCCAAGGCAATGATCATCGCTTCCAGGTTGGCGCGGGCGTCGTAGATGTCGTTCATCTCATCCAGCGACATGGGCGCTACCCGGTAGCCTTT  >  NC_002947/3307104‑3307397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.