New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4019785	35 (0.830)	3 (0.070)	3/246	NT	7.7%	coding (496/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4019828	39 (0.970)					coding (539/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

AACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4019690‑4019785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctcgGCAAACAAGCGGCGCTCCGCCAGTGCGGCATTCACCCGTTGCTCGAGCTCTTCGTTCAGGCGCTGCAGGGCCTGCTCTGCACGCCGGCGTTCGGTGACATCCTTGAACAGCACCGCTACCTGGCGTTTCTCGGCAGGTTCTATGCGA  <  NC_002947/4019828‑4019682                                                                                                                                                                                                                                                     AACCTGCCCAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGGCAAACAAGCGGCGCTCCGCCAGTGCGGCATTCACCCGTTGCTCGAGCTCTTC                                                                                                <  8:234164/149‑1    CTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGGCAAACAAGCGGCGCTCCGCCAGTGCGGCATTCACCCGTTGCTCGAG                                                                                                      <  3:24708/140‑1    CTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGGCAAACAAGCGGCGCTCCGCCAGTGCGGCATTCACCCGTTGCTCGAG                                                                                                      >  4:24708/1‑140                                                                                                GGCAAACAAGCGGCGCTCCGCCAGTGCGGCATTCACCCGTTGCTCGAGCTCTTCGTTCAGGCGCTGCAGGGCCTGCTCTGCACGCCGGCGTTCGGTGACATCCTTGCACAGCACCGCTACCTGGCGTTTCTCGGCAGGTTCTATGCGt  >  6:54627/1‑147                                                                                                                                                                                                                                                     AACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4019690‑4019785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctcgGCAAACAAGCGGCGCTCCGCCAGTGCGGCATTCACCCGTTGCTCGAGCTCTTCGTTCAGGCGCTGCAGGGCCTGCTCTGCACGCCGGCGTTCGGTGACATCCTTGAACAGCACCGCTACCTGGCGTTTCTCGGCAGGTTCTATGCGA  <  NC_002947/4019828‑4019682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.