New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4019785	35 (0.830)	3 (0.070)	3/246	NT	7.7%	coding (496/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4019828	39 (0.970)					coding (539/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

GGAACTGATTGCCACGGGCCACGTGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG  >  NC_002947/4019640‑4019933                                                                                                                                                  |                                                                                                                                                     ggAACTGATTGCCACGGGCCACGTGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAg                                                                                                                                                    >  4:10761/1‑148 (MQ=255)            ccACGGGCCACGTGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAAt                                                                                                                                        >  6:12744/1‑149 (MQ=255)            ccACGGGCCACGTGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCACGTAGCGGGGCTGTTCAAGGATGTCACCGAACTCCGCCGTGCAGAGCAGGCCCTGCATCGCATGAACGAACAGCACGAGCAACGGGTGAAt                                                                                                                                        >  8:169687/1‑149 (MQ=255)             cACGGGCCACGTGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATg                                                                                                                                       >  5:10389/1‑149 (MQ=255)                   ccACGTGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCAc                                                                                                                                 >  1:114718/1‑149 (MQ=255)                        tGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCg                                                                                                                            <  6:200372/149‑1 (MQ=255)                          cTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCgg                                                                                                                           <  2:73822/148‑1 (MQ=255)                           tGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAg                                                                                                                         >  2:108880/1‑149 (MQ=255)                                          ttCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAg                                                                                                                                                    <  2:204513/107‑1 (MQ=255)                                          ttCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAg                                                                                                                                                    >  1:204513/1‑107 (MQ=255)                                          ttCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTg                                                                                                            <  3:10761/147‑1 (MQ=255)                                           acgCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTGCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCc                                                                                                          >  6:54627‑M2/2‑147 (MQ=255)                                                  gAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGt                                                                                                  <  2:114718/149‑1 (MQ=255)                                                  gAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGt                                                                                                  <  5:12744/149‑1 (MQ=255)                                                   aaCCTGCCCAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGgcaaacaagcggcgctccgccagtgcggcattcacccgttgctcgagctcttc                                                                                                 <  8:234164‑M1/149‑54 (MQ=255)                                                      cTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGgcaaacaagcggcgctccgccagtgcggcattcacccgttgctcgag                                                                                                       <  3:24708‑M1/140‑48 (MQ=255)                                                      cTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGgcaaacaagcggcgctccgccagtgcggcattcacccgttgctcgag                                                                                                       >  4:24708‑M1/1‑93 (MQ=255)                                                        gCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCa                                                                                            >  7:24205/1‑149 (MQ=255)                                                          cGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATa                                                                                          <  8:24205/149‑1 (MQ=255)                                                           gagaAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTGGTTTGCCGAGCTGGGCGAGCATAg                                                                                         >  3:28821/1‑149 (MQ=255)                                                            agaAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAgt                                                                                        <  6:10389/149‑1 (MQ=255)                                                                aCGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAg                                                                                                                         <  6:148393/112‑1 (MQ=255)                                                                aCGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAg                                                                                                                         >  5:148393/1‑112 (MQ=255)                                                                 cGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGt                                                                                   <  7:169687/149‑1 (MQ=255)                                                                                   ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCa                                                                                            >  4:204207/1‑122 (MQ=255)                                                                                   ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCa                                                                                            <  3:204207/122‑1 (MQ=255)                                                                                   ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGa                                                                 <  1:40843/149‑1 (MQ=255)                                                                                   ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGa                                                                 >  4:221876/1‑149 (MQ=255)                                                                                      aaGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGAc                                                                >  7:39309/1‑147 (MQ=255)                                                                                                 cGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCAtgt                                                                       <  5:73974/129‑1 (MQ=255)                                                                                                 cGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCAtgt                                                                       >  6:73974/1‑129 (MQ=255)                                                                                                           gctGCAGGGCCTGCTCTGCAGCGCCTGAACGAAGAGCTCGAGTAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGt                                         >  3:172882/3‑149 (MQ=255)                                                                                                              gCAGAGCAGGCCCTGCAGCGCCGGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCaa                                      >  7:169075/1‑149 (MQ=255)                                                                                                                agagCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATc                                    <  8:169075/149‑1 (MQ=255)                                                                                                                agagCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATc                                    >  3:36298/1‑149 (MQ=255)                                                                                                                     aGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGATGGATGGCGATCAATCgcaag                               >  6:188710/1‑149 (MQ=255)                                                                                                                       gCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggc                             >  1:130479/1‑149 (MQ=255)                                                                                                                         ccTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCAATGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggc                             >  1:60684/1‑147 (MQ=255)                                                                                                                          cTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggccag                          >  5:6358/1‑149 (MQ=255)                                                                                                                          cTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggccag                          >  5:2661/1‑149 (MQ=255)                                                                                                                             cAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGccaggccagg                         <  3:221876/147‑1 (MQ=255)                                                                                                                                         gAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCcgagctcttcgttcaggcgctgcagggcctgctctgcacgccggcgttcggtgacatccttgaacagcaccgctacctggcgtttctgggcaggtt           <  8:234164‑M2/149‑97 (MQ=255)                                                                                                                                         gAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCt           >  7:102177/1‑149 (MQ=255)                                                                                                                                               cTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCcgagctcttcgttcaggcgctgcagggcctgctctgcacgccggcgttcggtgacatccttgaacagcaccgctacctggcgtttctcggcag              <  3:24708‑M2/140‑94 (MQ=255)                                                                                                                                               cTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCcgagctcttcgttcaggcgctgcagggcctgctctgcacgccggcgttcggtgacatccttgaacagcaccgctacctggcgtttctcggcag              >  4:24708‑M2/1‑47 (MQ=255)                                                                                                                                               cTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCtata     >  2:88903/1‑149 (MQ=255)                                                                                                                                                  ggcaaacaagcggcgctccgccagtgcggcattcacccgttgctcgagctcttcgttcaggcgctgcagggcctgctctgcacgccggcgttcggtgacatccttgcacagcaccgctacctggcgtttctcggcaggttctatgcgt   >  6:54627‑M1/1‑1 (MQ=255)                                                                                                                                                  gAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACgg  >  3:122091/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGAACTGATTGCCACGGGCCACGTGCTGTCGGTGACCACTTTTCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGG  >  NC_002947/4019640‑4019933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.