New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4019785	35 (0.830)	3 (0.070)	3/246	NT	7.7%	coding (496/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4019828	39 (0.970)					coding (539/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

TCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCGGGTTGTTCGA  >  NC_002947/4019682‑4019975                                                                                                                                                   |                                                                                                                                                    acgCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTGCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCc                                                                                                                                                    >  6:54627‑M2/2‑147 (MQ=255)        gAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGt                                                                                                                                            <  5:12744/149‑1 (MQ=255)        gAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGt                                                                                                                                            <  2:114718/149‑1 (MQ=255)              gCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCa                                                                                                                                      >  7:24205/1‑149 (MQ=255)                cGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATa                                                                                                                                    <  8:24205/149‑1 (MQ=255)                 gagaAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTGGTTTGCCGAGCTGGGCGAGCATAg                                                                                                                                   >  3:28821/1‑149 (MQ=255)                  agaAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAgt                                                                                                                                  <  6:10389/149‑1 (MQ=255)                       cGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGt                                                                                                                             <  7:169687/149‑1 (MQ=255)                                         ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCa                                                                                                                                      <  3:204207/122‑1 (MQ=255)                                         ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCa                                                                                                                                      >  4:204207/1‑122 (MQ=255)                                         ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGa                                                                                                           <  1:40843/149‑1 (MQ=255)                                         ttCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGa                                                                                                           >  4:221876/1‑149 (MQ=255)                                            aaGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGAc                                                                                                          >  7:39309/1‑147 (MQ=255)                                                       cGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCAtgt                                                                                                                 >  6:73974/1‑129 (MQ=255)                                                       cGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCAtgt                                                                                                                 <  5:73974/129‑1 (MQ=255)                                                                 gctGCAGGGCCTGCTCTGCAGCGCCTGAACGAAGAGCTCGAGTAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGt                                                                                   >  3:172882/3‑149 (MQ=255)                                                                    gCAGAGCAGGCCCTGCAGCGCCGGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCaa                                                                                >  7:169075/1‑149 (MQ=255)                                                                      agagCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATc                                                                              <  8:169075/149‑1 (MQ=255)                                                                      agagCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATc                                                                              >  3:36298/1‑149 (MQ=255)                                                                           aGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGATGGATGGCGATCAATCgcaag                                                                         >  6:188710/1‑149 (MQ=255)                                                                             gCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggc                                                                       >  1:130479/1‑149 (MQ=255)                                                                               ccTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCAATGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggc                                                                       >  1:60684/1‑147 (MQ=255)                                                                                cTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggccag                                                                    >  5:2661/1‑149 (MQ=255)                                                                                cTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCgccaggccag                                                                    >  5:6358/1‑149 (MQ=255)                                                                                   cAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGccaggccagg                                                                   <  3:221876/147‑1 (MQ=255)                                                                                               gAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCcgagctcttcgttcaggcgctgcagggcctgctctgcacgccggcgttcggtgacatccttgaacagcaccgctacctggcgtttctgggcaggtt                                                     <  8:234164‑M2/149‑97 (MQ=255)                                                                                               gAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCt                                                     >  7:102177/1‑149 (MQ=255)                                                                                                     cTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCcgagctcttcgttcaggcgctgcagggcctgctctgcacgccggcgttcggtgacatccttgaacagcaccgctacctggcgtttctcggcag                                                        >  4:24708‑M2/1‑47 (MQ=255)                                                                                                     cTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCcgagctcttcgttcaggcgctgcagggcctgctctgcacgccggcgttcggtgacatccttgaacagcaccgctacctggcgtttctcggcag                                                        <  3:24708‑M2/140‑94 (MQ=255)                                                                                                     cTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCtata                                               >  2:88903/1‑149 (MQ=255)                                                                                                        gAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACgg                                            >  3:122091/1‑149 (MQ=255)                                                                                                          ggaaCGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGgga                                          <  4:172882/147‑1 (MQ=255)                                                                                                           cAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGggag                                         <  1:108880/149‑1 (MQ=255)                                                                                                           cAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGgga                                          <  2:130479/148‑1 (MQ=255)                                                                                                                 gTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACAcc                                   >  4:152584/1‑149 (MQ=255)                                                                                                                 gTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACAcc                                   >  5:39003/1‑149 (MQ=255)                                                                                                                   gAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGt                                                                                                              >  6:188458/1‑72 (MQ=255)                                                                                                                   gAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGt                                                                                                              <  5:188458/72‑1 (MQ=255)                                                                                                                            aCTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCg                        <  1:88903/149‑1 (MQ=255)                                                                                                                                 cGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTAc                   <  4:36298/149‑1 (MQ=255)                                                                                                                                   gAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCt                 >  6:236597/1‑149 (MQ=255)                                                                                                                                      cgccgcTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGcc              >  6:138041/1‑149 (MQ=255)                                                                                                                                      cgccgcTTGTTTGCCGAGCTGGTCGATCATAGTGGGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGcc              <  7:240484/149‑1 (MQ=255)                                                                                                                                         cgcTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCgg           <  3:152584/149‑1 (MQ=255)                                                                                                                                          gcTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTTGCGGTCAATGGCCAGGCCAGTCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCgtg          <  5:188710/149‑3 (MQ=255)                                                                                                                                               tttGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCGGgttgtt     <  6:39003/149‑1 (MQ=255)                                                                                                                                                   ccGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCGGGTTGTTCGa  <  6:2661/148‑1 (MQ=255)                                                                                                                                                   ccGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCGGGTTGTTCGa  <  6:6358/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TCGCATAGAACCTGCCGAGAAACGCCAGGTAGCGGTGCTGTTCAAGGATGTCACCGAACGCCGGCGTGCAGAGCAGGCCCTGCAGCGCCTGAACGAAGAGCTCGAGCAACGGGTGAATGCCGCACTGGCGGAGCGCCGCTTGTTTGCCGAGCTGGTCGATCATAGTGTGGTCAATGTGCATGTGGTCGACAAGGACCTGCGCTGGCTGGCGGTCAATCGCCAGGCCAGGCATGACTTCCACCTGCTATACGGGAGGACACCCGAAATCGGCGACTACCTGCCCGGGTTGTTCGA  >  NC_002947/4019682‑4019975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.