New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4052589	39 (0.920)	3 (0.070)	3/250	NT	7.3%	coding (521/678 nt)	PP_3572	hypothetical protein
	?	NC_002947	= 4052630	38 (0.930)					coding (480/678 nt)	PP_3572	hypothetical protein

ATCGCCCGGCACCCCATAGCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4052438‑4052589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGTGCACTCGGCGGCGCTGAAGATTGCTGGCGAGCTGACCTGGCCGCT  <  NC_002947/4052630‑4052583                                                                                                                                                                                                          ATCGCCCGGCACCCCATAGCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCG                                                     >  8:65179/1‑149     CCCGGCACCCCATAGCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGC                                                   >  4:145283/1‑147                                            GCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCCGTGCACTCGGCGGCGCTGAAGATTGCTGGCGAGCTGACC          >  1:103051/1‑149                                                  GTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCCGTGCACTCGGCGGCGCTGAAGATTGCTGGCGAGCTGACCTGGCCG    <  3:184936/149‑1                                                     ACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCCGTGCACTCGGCGGCGCTGAAGATTGCTGGCGAGCTGACCTGGCCGCT  <  2:103051/148‑1                                                                                                                                                                                                          ATCGCCCGGCACCCCATAGCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4052438‑4052589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGTGCACTCGGCGGCGCTGAAGATTGCTGGCGAGCTGACCTGGCCGCT  <  NC_002947/4052630‑4052583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.