New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4052589	39 (0.920)	3 (0.070)	3/250	NT	7.3%	coding (521/678 nt)	PP_3572	hypothetical protein
	?	NC_002947	= 4052630	38 (0.930)					coding (480/678 nt)	PP_3572	hypothetical protein

CCATAGCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGCTTCGAT  >  NC_002947/4052451‑4052734                                                                                                                                           |                                                                                                                                                  ccATAGCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTc                                                                                                                                         >  6:90537/1‑149 (MQ=255)      gCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAg                                                                                                                                    >  8:125854/1‑149 (MQ=255)         tGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCa                                                                                                                                  >  4:152877/1‑148 (MQ=255)             gcggcgGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCt                                                                                                                              >  5:181391/1‑148 (MQ=255)              cggcggTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTc                                                                                                                            <  3:145283/149‑1 (MQ=255)                      gggTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGcgccg                                                                                                                     <  3:257310/148‑1 (MQ=255)                               gcgcGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCcgtgcactcggcggcgctgaagattgctggcgagctgacc                                                                                                           >  1:103051‑M1/1‑109 (MQ=255)                               gcgcGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCAc                                                                                                           >  4:80358/1‑149 (MQ=255)                                     gTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCcgtgcactcggcggcgctgaagattgctggcgagctgacctggccg                                                                                                     <  3:184936‑M1/149‑47 (MQ=255)                                      tGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCg                                                                                                    <  6:181391/149‑1 (MQ=255)                                        aCGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCcgtgcactcggcggcgctgaagattgctggcgagctgacctggccgct                                                                                                   <  2:103051‑M1/148‑49 (MQ=255)                                           tAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTc                                                                                               <  3:152877/149‑1 (MQ=255)                                             aTCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCGGAGTGCACGGGccc                                                                                                     >  5:241762/1‑141 (MQ=255)                                             aTCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGccc                                                                                                     <  6:241762/141‑1 (MQ=255)                                                      cTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTg                                                                                    >  8:9910/1‑149 (MQ=255)                                                               aTAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATcgccg                                                                           >  8:80847/1‑149 (MQ=255)                                                                      gcccgcaGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCa                                                                     <  7:253110/143‑1 (MQ=255)                                                                         cacaGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGt                                                                                                               >  6:191521/1‑103 (MQ=255)                                                                              gCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGc                                                              >  4:248891/1‑147 (MQ=255)                                                                              gCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGc                                                              >  8:83564/1‑147 (MQ=255)                                                                               ccATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCcag                                                           <  3:248891/149‑1 (MQ=255)                                                                                     aGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCg                                                     >  8:35362/1‑149 (MQ=255)                                                                                          gCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCgg                                                >  6:123296/1‑149 (MQ=255)                                                                                               tCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAgg                                           <  3:80358/149‑1 (MQ=255)                                                                                                 gggTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGt                                          <  4:174026/148‑1 (MQ=255)                                                                                                   gTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGgc                                       >  3:152152/1‑149 (MQ=255)                                                                                                        tGTCGGCCCAATCGACGCGCAGGTCCACCACCGGCCAGGTCCGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCCCGGGCCCGGATAACCCACCCGCAGCCATCGCCGCGTGCATGGCTGACAGCAGGCGGTCGGCCAGGTGgccgccc                                  >  7:152773/1‑148 (MQ=255)                                                                                                          tCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGccgccg                                  <  7:9910/147‑1 (MQ=255)                                                                                                                cAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCa                                                                                           >  6:18130/1‑84 (MQ=255)                                                                                                                cAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCa                                                                                           <  5:18130/84‑1 (MQ=255)                                                                                                                cAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTgg                                        >  2:31213/1‑135 (MQ=255)                                                                                                                cAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTgg                                        <  1:31213/135‑1 (MQ=255)                                                                                                                 aaTCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTc                          >  5:124630/1‑148 (MQ=255)                                                                                                                     gACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCaaaa                      <  5:123296/148‑1 (MQ=255)                                                                                                                          gcAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCCCCCGCTGCCATCGCCGCGTGCATGGCTGCCCGCAGGCGGTCGGCCCGGTGGCCGCCGGCCTGGTCACAAGCCCGc                >  4:182983/1‑149 (MQ=255)                                                                                                                               tCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCAt           >  2:265056/1‑149 (MQ=255)                                                                                                                                ccaccaGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGc                                                              >  5:198486/1‑97 (MQ=255)                                                                                                                                ccaccaGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGc                                                              <  6:198486/97‑1 (MQ=255)                                                                                                                                  accaGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGc        >  5:59505/1‑149 (MQ=255)                                                                                                                                  accaGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGc        >  5:217393/1‑149 (MQ=255)                                                                                                                                  accaGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGc        >  8:67543/1‑149 (MQ=255)                                                                                                                                     aGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGggccgctggtggacctgcgcgtcgattgggccgacagcgacccgatcggcgtgctcgatggcctgtggcaagcctatcgcccgcagatgcaggattacgt      <  2:103051‑M2/148‑101 (MQ=255)                                                                                                                                      gCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGCTTCg    <  5:90537/149‑1 (MQ=255)                                                                                                                                       cGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGggccgctggtggacctgcgcgtcgattgggccgacagcgacccgatcggcgtgctcgatggcctgtggcaagcctatcgcccgcagatgcaggattacgtcac   <  3:184936‑M2/149‑104 (MQ=255)                                                                                                                                         gCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGCTTCGa   <  1:142908/147‑1 (MQ=255)                                                                                                                                         gCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGCTTCGAt  >  8:201473/1‑148 (MQ=255)                                                                                                                                         gCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCAAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGCTTCGa   >  2:142908/1‑147 (MQ=255)                                                                                                                                           |                                                                                                                                                  CCATAGCTTGGCGCGGCGGTCGGGTTGAGGGCGCGGGTGACGTAATCCTGCATCTGCGGGCGATAGGCTTGCCACAGGCCATCGAGCACGCCGATCGGGTCGCTGTCGGCCCAATCGACGCGCAGGTCCACCAGCGGCCAGGTCAGCTCGCCAGCAATCTTCAGCGCCGCCGAGTGCACGGGCCCGGCTTCGCCACCCGCTGCCATCGCCGCGTGCATGGCTGCCAGCAGGCGGTCGGCCAGGTGGCCGCCGGCCTGTTCAAAAGCCAGCACCATGGCTTCGAT  >  NC_002947/4052451‑4052734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.