New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4121367 =	41 (0.970)	3 (0.080)	3/244	NT	7.1%	coding (420/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	4121403 =	40 (1.000)					coding (384/789 nt)	PP_3624	hypothetical protein

GGCGGATCGACTTGATGGCCGGGTATTTCCTGACCGAAGCGCGCCGGCAGCATGTGGACTTCATTGCCCCGCCGTTTTTGCGCACACCCAGCGTCATCTGGGTGCGCCAGGACAATGCCTTTGCCTACCAGCAATGGGCCGACCTCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4121518‑4121367 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTGAC  >  NC_002947/4121403‑4121547                                                                                                                                                                                                                                                                                                           GGCGGATCGACTTGATGGCCGGGTATTTCCTGACCGAAGCGCGCCGGCAGCATGTGGACTTCATTGCCCCGCCGTTTTTGCGCACACCCAGCGTCATCTGGGTGCGCCAGGACAATGCCTTTGCCTACCAGCAATGGGCCGACCTCAAA                                                                                                                                                      <  7:224405/149‑1                                                                                                            CAGGACAATGCCTTTGCCTACCAGCAATGGGCCGACCTCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTG                                                                              >  3:192529/1‑114                                                                                                            CAGGACAATGCCTTTGCCTACCAGCAATGGGCCGACCTCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTG                                                                              <  4:192529/114‑1                                                                                                             AGGACAATGCCTTTGCCTACCAGCAATGGGCCGACCTCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGAAATGAAGTCCACATGCTGCCGGCGCGCGTCGGTCTGGAAATACCCGGCCAgc                                            >  3:194144/1‑145                                                                                                                                                   AAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTG    <  7:153639/149‑1                                                                                                                                                   AAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGT     >  1:186715/1‑148                                                                                                                                                   AAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGT     >  6:114936/1‑148                                                                                                                                                     AGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTGAC  >  4:43891/1‑149                                                                                                                                                                                                                                                                                                           GGCGGATCGACTTGATGGCCGGGTATTTCCTGACCGAAGCGCGCCGGCAGCATGTGGACTTCATTGCCCCGCCGTTTTTGCGCACACCCAGCGTCATCTGGGTGCGCCAGGACAATGCCTTTGCCTACCAGCAATGGGCCGACCTCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4121518‑4121367 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTGAC  >  NC_002947/4121403‑4121547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.