New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4121367 =	41 (0.970)	3 (0.080)	3/244	NT	7.1%	coding (420/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	4121403 =	40 (1.000)					coding (384/789 nt)	PP_3624	hypothetical protein

CTCGTACACCACGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTC  >  NC_002947/4121220‑4121510                                                                                                                                                    |                                                                                                                                                cTCGTACACCACGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCgg                                                                                                                                                 <  2:64183/148‑1 (MQ=255)   gtcacgagcccaggaagaagtgcgcaccgggcggatcgacttgatggccgggtatttcctgaccgaagcgcgccggcagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCt                                                                                                                                              >  4:43891‑M1/146‑149 (MQ=255)    gTACACCACGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCtt                                                                                                                                             >  7:116246/1‑149 (MQ=255)     cacgagcccaggaagaagtgcgcaccgggcggatcgacttgatggccgggtatttcctgaccgaagcgcgccggcagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCttt                                                                                                                                            <  7:153639‑M1/6‑1 (MQ=255)      acgagcccaggaagaagtgcgcaccgggcggatcgacttgatggccgggtatttcctgaccgaagcgcgccggcagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCttt                                                                                                                                            >  6:114936‑M1/143‑148 (MQ=255)      acgagcccaggaagaagtgcgcaccgggcggatcgacttgatggccgggtatttcctgaccgaagcgcgccggcagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCttt                                                                                                                                            >  1:186715‑M1/143‑148 (MQ=255)      acacCACGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCttt                                                                                                                                            >  3:219725/1‑148 (MQ=255)       caccacGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGa                                                                                                                                          <  4:215823/149‑1 (MQ=255)       caccacGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCCTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCttt                                                                                                                                            >  6:3093/1‑147 (MQ=255)         ccacGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCCTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAgg                                                                                                                                        <  5:3093/149‑1 (MQ=255)                       cgcTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGc                                                                                                                            <  6:22040/147‑1 (MQ=255)                            gtgCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTa                                                                                                                       <  7:13560/147‑1 (MQ=255)                            gtgCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAg                                                                                                                      <  8:116246/148‑1 (MQ=255)                             tgCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGc                                                                                                                    <  4:219725/149‑1 (MQ=255)                              gCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTACGc                                                                                                                    >  5:81162/1‑148 (MQ=255)                                          cGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTcc                                                                                                       >  2:2560/1‑149 (MQ=255)                                           gAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGcc                                                                                                                                               >  4:99953/1‑108 (MQ=255)                                           gAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGcc                                                                                                                                               <  3:99953/108‑1 (MQ=255)                                             gctggccgggtatttccagaccgacgcgcgccggcagcatgtggacttcatttccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCt                                                                                                      >  3:194144‑M1/104‑147 (MQ=255)                                                            tGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTg                                                                                                          >  2:218315/1‑128 (MQ=255)                                                            tGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTg                                                                                                          <  1:218315/128‑1 (MQ=255)                                                                cACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                 >  5:174013/1‑149 (MQ=255)                                                                 aCCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                 >  2:265172/1‑148 (MQ=255)                                                                 aCCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                 <  1:265172/148‑1 (MQ=255)                                                                  ccGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGgt                                                                               <  6:174013/149‑1 (MQ=255)                                                                          aGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCa                                                                        >  2:133175/1‑148 (MQ=255)                                                                             gTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCaaaaa                                                                    <  2:35231/149‑1 (MQ=255)                                                                               cagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTg                                                                                                     <  4:192529‑M1/45‑1 (MQ=255)                                                                               cagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTg                                                                                                     >  3:192529‑M1/70‑114 (MQ=255)                                                                                  aCTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                 <  2:155959/131‑1 (MQ=255)                                                                                  aCTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                 >  1:155959/1‑131 (MQ=255)                                                                                     ggCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAg                                                                                           <  4:85911/118‑1 (MQ=255)                                                                                     ggCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAg                                                                                           >  3:85911/1‑118 (MQ=255)                                                                                      gCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCggg                                                             <  4:170272/147‑1 (MQ=255)                                                                                      gCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCggg                                                             <  1:133175/147‑1 (MQ=255)                                                                                                aTTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACg                                                                                     >  7:246756/1‑113 (MQ=255)                                                                                                aTTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACg                                                                                     <  8:246756/113‑1 (MQ=255)                                                                                                  tCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCca                                                >  5:240817/1‑148 (MQ=255)                                                                                                             ttGGCCGTGGCTATTGTAGACCAGAGTGACACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGgc                                    >  5:68123/1‑149 (MQ=255)                                                                                                                 ccGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGgcgcgc                                <  6:240817/149‑1 (MQ=255)                                                                                                                      gCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCaaaa                                                                     >  2:55200/1‑107 (MQ=255)                                                                                                                      gCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCaaaa                                                                     <  1:55200/107‑1 (MQ=255)                                                                                                                       cTATTGTTGACCTGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCGCATTGCTGGTAGGCATAGGGTTTGTCCTTGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACTGCTGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGt                          <  6:81162/149‑1 (MQ=255)                                                                                                                             ttgACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGa                     <  1:138148/148‑1 (MQ=255)                                                                                                                               gACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGaaa                   >  8:153639/1‑148 (MQ=255)                                                                                                                                aCCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATa                 >  5:87556/1‑149 (MQ=255)                                                                                                                                aCCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATa                 >  4:109410/1‑149 (MQ=255)                                                                                                                                         ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                 >  2:233094/1‑76 (MQ=255)                                                                                                                                         ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                 <  1:233094/76‑1 (MQ=255)                                                                                                                                         ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCca                                                >  2:204785/1‑109 (MQ=255)                                                                                                                                         ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCca                                                <  1:204785/109‑1 (MQ=255)                                                                                                                                              cTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGt   <  6:68123/149‑1 (MQ=255)                                                                                                                                                tGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTc  >  7:229845/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                CTCGTACACCACGTAATCGCTGCGCTTGTGCATCAGCTTCTCGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTC  >  NC_002947/4121220‑4121510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.