New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4121367 =	41 (0.970)	3 (0.080)	3/244	NT	7.1%	coding (420/789 nt)	PP_3624	hypothetical protein
	?	NC_002947	4121403 =	40 (1.000)					coding (384/789 nt)	PP_3624	hypothetical protein

CGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTGACCACG  >  NC_002947/4121261‑4121551                                                                                                                                               |                                                                                                                                                     cGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTcc                                                                                                                                                >  2:2560/1‑149 (MQ=255)    gctggccgggtatttccagaccgacgcgcgccggcagcatgtggacttcatttccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCt                                                                                                                                               >  3:194144‑M1/104‑147 (MQ=255)                   tGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTg                                                                                                                                                   >  2:218315/1‑128 (MQ=255)                   tGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTg                                                                                                                                                   <  1:218315/128‑1 (MQ=255)                       cACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                                                          >  5:174013/1‑149 (MQ=255)                        aCCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                                                          <  1:265172/148‑1 (MQ=255)                        aCCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                                                          >  2:265172/1‑148 (MQ=255)                         ccGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGgt                                                                                                                        <  6:174013/149‑1 (MQ=255)                                 aGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCa                                                                                                                 >  2:133175/1‑148 (MQ=255)                                    gTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCaaaaa                                                                                                             <  2:35231/149‑1 (MQ=255)                                      cagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTg                                                                                                                                              <  4:192529‑M1/45‑1 (MQ=255)                                      cagcatgtggacttcattgccccgccgtttttgcgcacacccagcgtcatctgggtgcgccaggacaatGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTg                                                                                                                                              >  3:192529‑M1/70‑114 (MQ=255)                                         aCTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                                                          >  1:155959/1‑131 (MQ=255)                                         aCTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                                                          <  2:155959/131‑1 (MQ=255)                                            ggCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAg                                                                                                                                    <  4:85911/118‑1 (MQ=255)                                            ggCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAg                                                                                                                                    >  3:85911/1‑118 (MQ=255)                                             gCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCggg                                                                                                      <  4:170272/147‑1 (MQ=255)                                             gCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCggg                                                                                                      <  1:133175/147‑1 (MQ=255)                                                       aTTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACg                                                                                                                              <  8:246756/113‑1 (MQ=255)                                                       aTTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACg                                                                                                                              >  7:246756/1‑113 (MQ=255)                                                         tCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCca                                                                                         >  5:240817/1‑148 (MQ=255)                                                                    ttGGCCGTGGCTATTGTAGACCAGAGTGACACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGgc                                                                             >  5:68123/1‑149 (MQ=255)                                                                        ccGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGgcgcgc                                                                         <  6:240817/149‑1 (MQ=255)                                                                             gCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCaaaa                                                                                                              >  2:55200/1‑107 (MQ=255)                                                                             gCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCaaaa                                                                                                              <  1:55200/107‑1 (MQ=255)                                                                              cTATTGTTGACCTGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCGCATTGCTGGTAGGCATAGGGTTTGTCCTTGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACTGCTGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGt                                                                   <  6:81162/149‑1 (MQ=255)                                                                                    ttgACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGa                                                              <  1:138148/148‑1 (MQ=255)                                                                                      gACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGaaa                                                            >  8:153639/1‑148 (MQ=255)                                                                                       aCCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATa                                                          >  5:87556/1‑149 (MQ=255)                                                                                       aCCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATa                                                          >  4:109410/1‑149 (MQ=255)                                                                                                ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                                                          >  2:233094/1‑76 (MQ=255)                                                                                                ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTgg                                                                                                                          <  1:233094/76‑1 (MQ=255)                                                                                                ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCca                                                                                         >  2:204785/1‑109 (MQ=255)                                                                                                ccACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCca                                                                                         <  1:204785/109‑1 (MQ=255)                                                                                                  caggacaatgcctttgcctaccagcaatgggccgacctcaaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACAtgctg                                                                                  >  3:192529‑M2/46‑114 (MQ=255)                                                                                                  caggacaatgcctttgcctaccagcaatgggccgacctcaaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACAtgctg                                                                                  <  4:192529‑M2/69‑1 (MQ=255)                                                                                                   aggacaatgcctttgcctaccagcaatgggccgacctcaaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGAAATGAAGTCCACATGCTGCCGGCGCGCGTCGGTCTGGAAATACCCGGccagc                                                >  3:194144‑M2/45‑145 (MQ=255)                                                                                                     cTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGt                                            <  6:68123/149‑1 (MQ=255)                                                                                                       tGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTc                                           >  7:229845/1‑148 (MQ=255)                                                                                                              TTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGcc                                   <  7:224405‑M1/149‑1 (MQ=255)                                                                                                                    gTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTgc                             >  6:50811/1‑149 (MQ=255)                                                                                                                    gTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTg                              <  8:229845/148‑1 (MQ=255)                                                                                                                       ggCCCATTGCTGGTAGGCAAAGTCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCg                                                                     >  1:153012/1‑106 (MQ=255)                                                                                                                       ggCCCATTGCTGGTAGGCAAAGTCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCg                                                                     <  2:153012/106‑1 (MQ=255)                                                                                                                       ggCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCTACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGTCCATCAAGTCGATCCGCCCGGTGCGCa                          >  8:193953/1‑149 (MQ=255)                                                                                                                          ccATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACGCGGCCATCAAGTCGATCCGCCCg                                 <  5:180811/139‑1 (MQ=255)                                                                                                                          ccATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCg                                 >  6:180811/1‑139 (MQ=255)                                                                                                                                cTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGt                                            >  2:148418/1‑122 (MQ=255)                                                                                                                                cTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGt                                            <  1:148418/122‑1 (MQ=255)                                                                                                                                       gCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCCTCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCg          >  8:110344/1‑149 (MQ=255)                                                                                                                                         aaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGt         >  1:186715‑M2/7‑148 (MQ=255)                                                                                                                                         aaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGt         >  6:114936‑M2/7‑148 (MQ=255)                                                                                                                                         aaaggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTg        <  7:153639‑M2/143‑1 (MQ=255)                                                                                                                                           aggcATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTGAc      >  4:43891‑M2/5‑149 (MQ=255)                                                                                                                                               aTTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGc             >  1:176434/1‑138 (MQ=255)                                                                                                                                               aTTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGc             <  2:176434/138‑1 (MQ=255)                                                                                                                                               aTTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTGACCACg  >  5:37618/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                     CGAACGCCTGCCTGGCAGTGGGCACCGCTTCGAGGGTGAGACTGGCCTGGGCGTATTCATCGAACTGTTGGCCGTGGCTATTGTTGACCAGAGTGCCACCCTTGCGGCCTTTGAGGTCGGCCCATTGCTGGTAGGCAAAGGCATTGTCCTGGCGCACCCAGATGACGCTGGGTGTGCGCAAAAACGGCGGGGCAATGAAGTCCACATGCTGCCGGCGCGCTTCGGTCAGGAAATACCCGGCCATCAAGTCGATCCGCCCGGTGCGCACTTCTTCCTGGGCTCGTGACCACG  >  NC_002947/4121261‑4121551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.