New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4122505	41 (0.970)	4 (0.100)	4/244	NT	9.3%	coding (131/642 nt)	PP_3625	LysE family transporter
	?	NC_002947	= 4122534	39 (0.980)					coding (102/642 nt)	PP_3625	LysE family transporter

TCTTCTTCAGCAGTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4122353‑4122505 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcccaTGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAATGGCACGGGTCTGTTCTGTCTGTCGGCAGCGGCCATGCTGGGGCTAGGCGCACTGCTGGCCAGTTCTGAAGTA  <  NC_002947/4122534‑4122426                                                                                                                                                                                                                                                                        TCTTCTTCAGCAGTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTG                                                                                                                   >  5:198990/1‑149       TCAGCAGTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCC‑TTGCCCATGG                                                                                                            >  8:163964/1‑149                                          CCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGACCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCATGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAAT                                                                          <  6:136922/149‑1                                                CCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCATGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAATGGC                                                                       >  1:179165/1‑146                                                CCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCATGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAATGGC                                                                       <  2:179165/146‑1                                                 CCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCC‑TTGCCCATGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAATGGCACGGG                                                                  <  7:163964/149‑1                                                                                                                                                      CCCATGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAATGGCACGGGTCTGTTCTGTCTGTCGGCAGCGGCCATGCTGGGGCTAGGCGCACTGCTGGCCAGTTCTGAAGTA  >  5:207679/1‑113                                                                                                                                                      CCCATGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAATGGCACGGGTCTGTTCTGTCTGTCGGCAGCGGCCATGCTGGGGCTAGGCGCACTGCTGGCCAGTTCTGAAGTA  <  6:207679/113‑1                                                                                                                                                                                                                                                                        TCTTCTTCAGCAGTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4122353‑4122505 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcccaTGGCCAACGCAGCGCGATCTGGTCGTCGCTGGGCAATGGCACGGGTCTGTTCTGTCTGTCGGCAGCGGCCATGCTGGGGCTAGGCGCACTGCTGGCCAGTTCTGAAGTA  <  NC_002947/4122534‑4122426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.