New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4122505	41 (0.970)	4 (0.100)	4/244	NT	9.3%	coding (131/642 nt)	PP_3625	LysE family transporter
	?	NC_002947	= 4122534	39 (0.980)					coding (102/642 nt)	PP_3625	LysE family transporter

CCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGACAAACAGGAAAGGCTGCGTCAATTGCACG  >  NC_002947/4122395‑4122680                                                                                                                                            |                                                                                                                                                   ccgcccCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAgg                                                                                                                                           <  2:206100/149‑1 (MQ=255)                 cACGGCATTTAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGGATGGCAGCTGCAGACAGACAGAACAGACCCGTGACATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGAt                                                                                                                                <  4:122399/144‑1 (MQ=255)                  aCGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTCATAGCCa                                                                                                                           >  4:70821/1‑148 (MQ=255)                       aTTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAgg                                                                                                                     >  8:208359/1‑149 (MQ=255)                       aTTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAgg                                                                                                                     <  3:138699/149‑1 (MQ=255)                                tACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtggg                                                                                                                                                <  6:207679‑M2/113‑5 (MQ=255)                                tACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtggg                                                                                                                                                >  5:207679‑M2/1‑109 (MQ=255)                                tACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGc                                                                                                            >  3:87786/1‑149 (MQ=255)                                   ttCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGCTGGAAGGGCCTg                                                                                                         >  6:16381/1‑149 (MQ=255)                                    tCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTgg                                                                                                        >  1:220387/1‑149 (MQ=255)                                         aCTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTgg                                                                                                   <  7:208359/149‑1 (MQ=255)                                             gCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGCCCCGTGCAATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGAt                                                                                               >  8:120790/1‑149 (MQ=255)                                               cagcagTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATcg                                                                                             >  4:238209/1‑149 (MQ=255)                                                  cagTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGc                                                                                                            >  5:93281/1‑131 (MQ=255)                                                   agTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGAt                                                                                         >  4:6425/1‑149 (MQ=255)                                                      gcgcCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATgg                                                                                       <  7:120790/148‑1 (MQ=255)                                                          cTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATggcggc                                                                                   >  8:25022/1‑148 (MQ=255)                                                            aGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGAc                                                                                >  4:26940/1‑149 (MQ=255)                                                                ccAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAgg                                                                            <  2:220387/149‑1 (MQ=255)                                                                ccAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAgg                                                                            <  3:26940/149‑1 (MQ=255)                                                                                cGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCg                                                            <  3:6425/149‑1 (MQ=255)                                                                                      acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGAt                                                                                               <  6:55714/108‑1 (MQ=255)                                                                                      acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGAt                                                                                               >  5:55714/1‑108 (MQ=255)                                                                                      acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGt                                                         >  6:216677/1‑146 (MQ=255)                                                                                      acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTga                                                       <  5:216677/148‑1 (MQ=255)                                                                                       cagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTgag                                                      >  7:3683/1‑148 (MQ=255)                                                                                        agaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGaa                                                    >  2:225771/1‑149 (MQ=255)                                                                                           acagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATcc                                                 <  3:58506/149‑1 (MQ=255)                                                                                                cccGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaaggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagtactgttcaatgccgtgaagatcctgg                                            <  7:163964‑M2/149‑105 (MQ=255)                                                                                                 ccGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGt                                                                          >  4:28585/1‑118 (MQ=255)                                                                                                  cGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATcc                                                 >  2:251923/1‑142 (MQ=255)                                                                                                  cGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATcc                                                 <  1:251923/142‑1 (MQ=255)                                                                                                   gTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAg                                         >  4:194332/1‑149 (MQ=255)                                                                                                     gCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagtactgttcaatgccgtgaagatcctggg                                          <  2:179165‑M2/146‑107 (MQ=255)                                                                                                     gCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagtactgttcaatgccgtgaagatcctggg                                          >  1:179165‑M2/1‑40 (MQ=255)                                                                                                      ccATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAAcgc                                                                    >  2:91225/1‑119 (MQ=255)                                                                                                        aTTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggtcagttctgaagtactgttcaatgccgtgaagatcctgggggcggg                                    <  6:136922‑M2/149‑113 (MQ=255)                                                                                                        aTTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCg                                    >  5:81630/1‑149 (MQ=255)                                                                                                          tGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGt                                   >  8:12462/1‑148 (MQ=255)                                                                                                           gCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTc                                  <  7:25022/148‑1 (MQ=255)                                                                                                           gCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTc                                  <  4:87786/148‑1 (MQ=255)                                                                                                             ccAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGa                               <  1:225771/149‑1 (MQ=255)                                                                                                                   acgacCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGACAAACa                         <  3:238209/149‑1 (MQ=255)                                                                                                                    cgacCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGACaa                            <  1:53030/145‑1 (MQ=255)                                                                                                                    cgacCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGACaa                            >  2:53030/1‑145 (MQ=255)                                                                                                                          gATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGACAAACAGGAAAgg                  <  6:81630/149‑1 (MQ=255)                                                                                                                                          ccAtgggcaaggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagtactgttcaatgccgtgaagatcctgggggcgggctacctgttctacctgggcgcgcgacaactgctga  >  8:163964‑M2/1‑3 (MQ=255)                                                                                                                                           cATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGACAAACAGGAAAGGCTGCGTCAATTGCaag  >  7:110898/1‑146 (MQ=255)                                                                                                                                            |                                                                                                                                                   CCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGACAAACAGGAAAGGCTGCGTCAATTGCACG  >  NC_002947/4122395‑4122680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.