New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4122505	41 (0.970)	4 (0.100)	4/244	NT	9.3%	coding (131/642 nt)	PP_3625	LysE family transporter
	?	NC_002947	= 4122534	39 (0.980)					coding (102/642 nt)	PP_3625	LysE family transporter

TCAGCAGTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGA  >  NC_002947/4122359‑4122651                                                                                                                                                   |                                                                                                                                                   tcAGCAGTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCC‑TTGCCCAtgg                                                                                                                                                 >  8:163964‑M1/1‑146 (MQ=255)  cagcagTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGc                                                                                                                                                  <  6:198990/148‑1 (MQ=255)       gTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCgacgac                                                                                                                                            <  6:110342/149‑1 (MQ=255)       gTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCgacgac                                                                                                                                            <  7:68088/149‑1 (MQ=255)               gcgcCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATcgc                                                                                                                                    >  4:253109/1‑149 (MQ=255)                cgcCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATcgcg                                                                                                                                   <  3:253109/149‑1 (MQ=255)                 gcCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCgcgc                                                                                                                                  >  2:93097/1‑149 (MQ=255)                  cccAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCt                                                                                                                                 <  1:78665/149‑1 (MQ=255)                                    cccgcccCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGACCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAtggccaacgcagcgcgatctggtcgtcgctgggcaat                                                                                                               <  6:136922‑M1/149‑38 (MQ=255)                                     ccgcccCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAgg                                                                                                              <  2:206100/149‑1 (MQ=255)                                          cccAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAtggccaacgcagcgcgatctggtcgtcgctgggcaatggc                                                                                                            >  1:179165‑M1/1‑106 (MQ=255)                                          cccAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAtggccaacgcagcgcgatctggtcgtcgctgggcaatggc                                                                                                            <  2:179165‑M1/146‑41 (MQ=255)                                           ccAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTg                                                                                                                           >  6:58247/1‑130 (MQ=255)                                           ccAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTg                                                                                                                           <  5:58247/130‑1 (MQ=255)                                           ccAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCC‑TTGCCCAtggccaacgcagcgcgatctggtcgtcgctgggcaatggcacggg                                                                                                       <  7:163964‑M1/149‑46 (MQ=255)                                                     cACGGCATTTAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGGATGGCAGCTGCAGACAGACAGAACAGACCCGTGACATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGAt                                                                                                   <  4:122399/144‑1 (MQ=255)                                                      aCGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTCATAGCCa                                                                                              >  4:70821/1‑148 (MQ=255)                                                           aTTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAgg                                                                                        >  8:208359/1‑149 (MQ=255)                                                           aTTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAgg                                                                                        <  3:138699/149‑1 (MQ=255)                                                                    tACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtggg                                                                                                                   >  5:207679‑M2/1‑109 (MQ=255)                                                                    tACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtggg                                                                                                                   <  6:207679‑M2/113‑5 (MQ=255)                                                                    tACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGc                                                                               >  3:87786/1‑149 (MQ=255)                                                                       ttCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGCTGGAAGGGCCTg                                                                            >  6:16381/1‑149 (MQ=255)                                                                        tCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTgg                                                                           >  1:220387/1‑149 (MQ=255)                                                                             aCTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTgg                                                                      <  7:208359/149‑1 (MQ=255)                                                                                 gCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGCCCCGTGCAATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGAt                                                                  >  8:120790/1‑149 (MQ=255)                                                                                   cagcagTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATcg                                                                >  4:238209/1‑149 (MQ=255)                                                                                      cagTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGc                                                                               >  5:93281/1‑131 (MQ=255)                                                                                       agTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGAt                                                            >  4:6425/1‑149 (MQ=255)                                                                                          gcgcCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATgg                                                          <  7:120790/148‑1 (MQ=255)                                                                                              cTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATggcggc                                                      >  8:25022/1‑148 (MQ=255)                                                                                                aGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGAc                                                   >  4:26940/1‑149 (MQ=255)                                                                                                    ccAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAgg                                               <  2:220387/149‑1 (MQ=255)                                                                                                    ccAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAgg                                               <  3:26940/149‑1 (MQ=255)                                                                                                                    cGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCg                               <  3:6425/149‑1 (MQ=255)                                                                                                                          acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGAt                                                                  <  6:55714/108‑1 (MQ=255)                                                                                                                          acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGAt                                                                  >  5:55714/1‑108 (MQ=255)                                                                                                                          acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGt                            >  6:216677/1‑146 (MQ=255)                                                                                                                          acagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTga                          <  5:216677/148‑1 (MQ=255)                                                                                                                           cagaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTgag                         >  7:3683/1‑148 (MQ=255)                                                                                                                            agaacagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGaa                       >  2:225771/1‑149 (MQ=255)                                                                                                                               acagaCCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATcc                    <  3:58506/149‑1 (MQ=255)                                                                                                                                    cccGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaaggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagtactgttcaatgccgtgaagatcctgg               <  7:163964‑M2/149‑105 (MQ=255)                                                                                                                                     ccGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGt                                             >  4:28585/1‑118 (MQ=255)                                                                                                                                      cGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATcc                    <  1:251923/142‑1 (MQ=255)                                                                                                                                      cGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATcc                    >  2:251923/1‑142 (MQ=255)                                                                                                                                       gTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAg            >  4:194332/1‑149 (MQ=255)                                                                                                                                         gCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagtactgttcaatgccgtgaagatcctggg             >  1:179165‑M2/1‑40 (MQ=255)                                                                                                                                         gCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagtactgttcaatgccgtgaagatcctggg             <  2:179165‑M2/146‑107 (MQ=255)                                                                                                                                          ccATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAAcgc                                       >  2:91225/1‑119 (MQ=255)                                                                                                                                            aTTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCAtgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggtcagttctgaagtactgttcaatgccgtgaagatcctgggggcggg       <  6:136922‑M2/149‑113 (MQ=255)                                                                                                                                            aTTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCg       >  5:81630/1‑149 (MQ=255)                                                                                                                                              tGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGt      >  8:12462/1‑148 (MQ=255)                                                                                                                                               gCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTc     <  7:25022/148‑1 (MQ=255)                                                                                                                                               gCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTc     <  4:87786/148‑1 (MQ=255)                                                                                                                                                cccAtggccaacgcagcgcgatctggtcgtcgctgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagta                                       <  6:207679‑M1/113‑110 (MQ=255)                                                                                                                                                cccAtggccaacgcagcgcgatctggtcgtcgctgggcaatggcacgggtctgttctgtctgtcggcagcggccatgctggggctaggcgcactgctggccagttctgaagta                                       >  5:207679‑M1/1‑4 (MQ=255)                                                                                                                                                 ccAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGa  <  1:225771/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TCAGCAGTTGTCGCGCGCCCAGGTAGAACAGGTAGCCCGCCCCCAGGATCTTCACGGCATTGAACAGTACTTCAGAACTGGCCAGCAGTGCGCCTAGCCCCAGCATGGCCGCTGCCGACAGACAGAACAGACCCGTGCCATTGCCCAGCGACGACCAGATCGCGCTGCGTTGGCCATGGGCAAGGCTGTTGTTGATAGCCATCAAGGTGGCAGGGCCTGGGCTGGCGATCGCGATGGCGGCGACCAGGGTAAACGCGAACAGCGAGTGAGAATCCATTTTCAGGCTCGTCAGA  >  NC_002947/4122359‑4122651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.