| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4171230 | 33 (0.780) | 4 (0.100) | 3/244 | NT | 11.7% | intergenic (+46/+14) | PP_3669/PP_3670 | LysR family transcriptional regulator/DMT superfamily permease |
| ? | NC_002947 | = 4171262 | 29 (0.730) | coding (861/879 nt) | PP_3670 | DMT superfamily permease | |||||
CATCACCGAGGCCGAGCTGTCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4171079‑4171230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcctgGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCTGTACGACCGATAGGCGCAGCGTTGTGCTGCGAAGAGGGCATCACTGCCTGGCCATGAACTGCAGGATGCGGTCGCGCAGCCAGCGCTCGGCGGGGTCGTTGTCCTGGG < NC_002947/4171262‑4171117 CATCACCGAGGCCGAGCTGTCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGC > 3:164300/1‑149 TCACCGAGGCCGAGCTGTCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCT < 3:83860/149‑1 AGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCT < 2:144243/149‑1 CGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCTGTACGACCGATAG < 2:222130/149‑1 TGCGCGACCGCGTCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCT < 3:84556/122‑1 TGCGCGACCGCGTCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCT > 4:84556/1‑122 caTGGATGCAGTGCGGCAAATAGCAGCCGCGTGCTTCAGGCTGTACGACCGATAGGCGCAGCGTTGTGCTGCGAAGAGGGCATCACTGCCTGGCCATGAACTGCAGGATGCGGTCGCGCAGCCAGCGCTCGGCGGGGTCGTTGTCCTGG < 8:240926/147‑1 CCTGGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCTGTACGACCGATAGGCGCAGCGTTGTGCTGCGAAGAGGGCATCACTGCCTGGCCATGAACTGCAGGATGCGGTCGCGCAGCCAGCGCTCGGCGGGGTCGTTGTCCTGG > 2:250768/1‑149 CTGGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCTGTACGACCGATAGGCGCAGCGTTGTGCTGCGAAGAGGGCATCACTGCCTGGCCATGAACTGCAGGATGCGGTCGCGCAGCCAGCGCTCGGCGGGGTCGTTGTCCTGGG > 6:204190/1‑149 CATCACCGAGGCCGAGCTGTCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4171079‑4171230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcctgGATGCAGCGCGGCAAATAGCAGCCGCGTGCTTCAGGCTGTACGACCGATAGGCGCAGCGTTGTGCTGCGAAGAGGGCATCACTGCCTGGCCATGAACTGCAGGATGCGGTCGCGCAGCCAGCGCTCGGCGGGGTCGTTGTCCTGGG < NC_002947/4171262‑4171117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |