New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4171230	33 (0.780)	4 (0.100)	3/244	NT	11.7%	intergenic (+46/+14)	PP_3669/PP_3670	LysR family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 4171262	29 (0.730)					coding (861/879 nt)	PP_3670	DMT superfamily permease

CCGAGGCCGAGCTGTCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAA  >  NC_002947/4171084‑4171376                                                                                                                                                   |                                                                                                                                                   ccGAGGCCGAGCTGTCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGaa                                                                                                                                                  <  6:203396/149‑1 (MQ=255)               tCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTa                                                                                                                                    >  2:216186/1‑149 (MQ=255)                 gATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTAtt                                                                                                                                  >  8:58843/1‑149 (MQ=255)                  agggTCTGGAGCGGCGCCCAGGACAACAACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGGACGCGGCTGCTAttt                                                                                                                                 <  4:106038/147‑1 (MQ=255)                  aTGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTAttt                                                                                                                                 <  4:164300/149‑1 (MQ=255)                          gAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCt                                                                                                                         <  2:1071/149‑1 (MQ=255)                          gAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCt                                                                                                                         <  1:216186/149‑1 (MQ=255)                          gAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCt                                                                                                                         >  5:204190/1‑149 (MQ=255)                             cggcgCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCa                                                                                                                      >  8:153489/1‑149 (MQ=255)                               gcgcCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCt                                                                                                                         <  4:201693/144‑1 (MQ=255)                               gcgcCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCt                                                                                                                         >  3:201693/1‑144 (MQ=255)                                  cccAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcag                                                                                                                 >  6:204190‑M2/1‑146 (MQ=255)                                   ccAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcagg                                                                                                                >  2:250768‑M2/1‑145 (MQ=255)                                   ccAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCACTGCATCcatg                                                                                                                <  8:240926‑M2/149‑5 (MQ=255)                                     aGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGgatgcagcgcggcaaatagcagccgcgtgcttcaggct                                                                                                              <  2:144243‑M1/149‑39 (MQ=255)                                            cGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGcc                                                                                                         >  4:246509/1‑147 (MQ=255)                                            cGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCaa                                                                                                       >  4:226538/1‑149 (MQ=255)                                              aCCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGc                                                                                                     >  2:93861/1‑149 (MQ=255)                                                  cgccgAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGgatgcagcgcggcaaatagcagccgcgtgcttcaggctgtacgaccgatag                                                                                                 <  2:222130‑M1/149‑52 (MQ=255)                                                               ctgCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCAc                                                                                    <  4:103699/149‑1 (MQ=255)                                                                tgCGCGACCGCGTCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGgatgcagcgcggcaaatagcagccgcgtgcttcaggct                                                                                                              >  4:84556‑M1/1‑84 (MQ=255)                                                                tgCGCGACCGCGTCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGgatgcagcgcggcaaatagcagccgcgtgcttcaggct                                                                                                              <  3:84556‑M1/122‑39 (MQ=255)                                                                                 cAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAgg                                                                    <  7:58843/147‑1 (MQ=255)                                                                                        tGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTa                                                           <  3:226538/149‑1 (MQ=255)                                                                                          gCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTAt                                                          <  1:237258/148‑1 (MQ=255)                                                                                           ccAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATcc                                                        <  1:93861/149‑1 (MQ=255)                                                                                            cAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGACCACCAAAATCCCCACCAGGCTCAGGGTATCCg                                                       >  8:28657/1‑149 (MQ=255)                                                                                             aGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCgg                                                      >  1:128109/1‑149 (MQ=255)                                                                                                  gTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGACCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCt                                                 <  7:28657/149‑1 (MQ=255)                                                                                                    gATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTgg                                               >  3:7835/1‑149 (MQ=255)                                                                                                       gCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTg                                            >  6:246821/1‑149 (MQ=255)                                                                                                          ctctTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTac                                         <  3:246509/149‑1 (MQ=255)                                                                                                                 cagcaCAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACg                                   >  3:228849/1‑148 (MQ=255)                                                                                                                  agcaCAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACg                                   >  4:40353/1‑147 (MQ=255)                                                                                                                       aaCGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCaa                            <  7:153489/149‑1 (MQ=255)                                                                                                                              cgcCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAAccc                     >  1:23063/1‑149 (MQ=255)                                                                                                                                 cTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggatgcggtcgcgcagccagcgctcggcg                  <  2:222130‑M2/149‑99 (MQ=255)                                                                                                                                          gTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCCCTGAGGCAGCTCACCAAAATCCCCCCCAGGCTCAGGGTATCCGGCACCTGGCGGTACACCCCGAAGCCAAGCACCCCGGCAAACACGAt         >  5:69604/1‑149 (MQ=255)                                                                                                                                          gTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACAAt         >  7:233802/1‑149 (MQ=255)                                                                                                                                              aGCCTGAAGCACGCGGCTGCTATTTGCCTCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGTCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTgg     <  7:240926/149‑1 (MQ=255)                                                                                                                                              aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggatgcggtcgcgcagccagcgctcggcggggtcgttgtcct     <  2:144243‑M2/149‑112 (MQ=255)                                                                                                                                              aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggacgcggtcgcgca                                >  4:84556‑M2/1‑38 (MQ=255)                                                                                                                                              aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggacgcggtcgcgca                                <  3:84556‑M2/122‑85 (MQ=255)                                                                                                                                              aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTgg     <  5:246821/149‑1 (MQ=255)                                                                                                                                              aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTgg     <  4:7835/149‑1 (MQ=255)                                                                                                                                                ccTGgatgcagcgcggcaaatagcagccgcgtgcttcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggatgcggtcgcgcagccagcgctcggcggggtcgttgtcctgg   >  2:250768‑M1/1‑4 (MQ=255)                                                                                                                                                catggatgcagtgcggcaaatagcagccgcgtgcttcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggatgcggtcgcgcagccagcgctcggcggggtcgttgtcctgg   <  8:240926‑M1/147‑146 (MQ=255)                                                                                                                                                 cTGgatgcagcgcggcaaatagcagccgcgtgcttcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggatgcggtcgcgcagccagcgctcggcggggtcgttgtcctggg  >  6:204190‑M1/1‑3 (MQ=255)                                                                                                                                                  tGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCaa  >  1:51920/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCGAGGCCGAGCTGTCGATGGTCTGGAGCGGCGCCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAA  >  NC_002947/4171084‑4171376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.