New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4171230	33 (0.780)	4 (0.100)	3/244	NT	11.7%	intergenic (+46/+14)	PP_3669/PP_3670	LysR family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 4171262	29 (0.730)					coding (861/879 nt)	PP_3670	DMT superfamily permease

CCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAACGCCGGCGCTGCAT  >  NC_002947/4171117‑4171410                                                                                                                                                  |                                                                                                                                                     cccAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcag                                                                                                                                                   >  6:204190‑M2/1‑146 (MQ=255)  ccAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcagg                                                                                                                                                  >  2:250768‑M2/1‑145 (MQ=255)  ccAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCACTGCATCcatg                                                                                                                                                  <  8:240926‑M2/149‑5 (MQ=255)           cGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGcc                                                                                                                                           >  4:246509/1‑147 (MQ=255)           cGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCaa                                                                                                                                         >  4:226538/1‑149 (MQ=255)             aCCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGc                                                                                                                                       >  2:93861/1‑149 (MQ=255)                              ctgCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCAc                                                                                                                      <  4:103699/149‑1 (MQ=255)                                                cAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAgg                                                                                                      <  7:58843/147‑1 (MQ=255)                                                       tGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTa                                                                                             <  3:226538/149‑1 (MQ=255)                                                         gCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTAt                                                                                            <  1:237258/148‑1 (MQ=255)                                                          ccAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATcc                                                                                          <  1:93861/149‑1 (MQ=255)                                                           cAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGACCACCAAAATCCCCACCAGGCTCAGGGTATCCg                                                                                         >  8:28657/1‑149 (MQ=255)                                                            aGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCgg                                                                                        >  1:128109/1‑149 (MQ=255)                                                                 gTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGACCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCt                                                                                   <  7:28657/149‑1 (MQ=255)                                                                   gATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTgg                                                                                 >  3:7835/1‑149 (MQ=255)                                                                      gCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTg                                                                              >  6:246821/1‑149 (MQ=255)                                                                         ctctTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTac                                                                           <  3:246509/149‑1 (MQ=255)                                                                                cagcaCAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACg                                                                     >  3:228849/1‑148 (MQ=255)                                                                                 agcaCAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACg                                                                     >  4:40353/1‑147 (MQ=255)                                                                                      aaCGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCaa                                                              <  7:153489/149‑1 (MQ=255)                                                                                             cgcCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAAccc                                                       >  1:23063/1‑149 (MQ=255)                                                                                                cTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggatgcggtcgcgcagccagcgctcggcg                                                    <  2:222130‑M2/149‑99 (MQ=255)                                                                                                         gTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCCCTGAGGCAGCTCACCAAAATCCCCCCCAGGCTCAGGGTATCCGGCACCTGGCGGTACACCCCGAAGCCAAGCACCCCGGCAAACACGAt                                           >  5:69604/1‑149 (MQ=255)                                                                                                         gTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACAAt                                           >  7:233802/1‑149 (MQ=255)                                                                                                             aGCCTGAAGCACGCGGCTGCTATTTGCCTCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGTCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTgg                                       <  7:240926/149‑1 (MQ=255)                                                                                                             aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggatgcggtcgcgcagccagcgctcggcggggtcgttgtcct                                       <  2:144243‑M2/149‑112 (MQ=255)                                                                                                             aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggacgcggtcgcgca                                                                  <  3:84556‑M2/122‑85 (MQ=255)                                                                                                             aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCcaggctgtacgaccgataggcgcagcgttgtgctgcgaagagggcatcactgcctggccatgaactgcaggacgcggtcgcgca                                                                  >  4:84556‑M2/1‑38 (MQ=255)                                                                                                             aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTgg                                       <  5:246821/149‑1 (MQ=255)                                                                                                             aGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTgg                                       <  4:7835/149‑1 (MQ=255)                                                                                                                 tGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCaa                                    >  1:51920/1‑148 (MQ=255)                                                                                                                          cgGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACg                          >  4:126926/1‑149 (MQ=255)                                                                                                                                  aTTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAg                   >  8:35216/1‑148 (MQ=255)                                                                                                                                  aTTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAg                   >  6:107210/1‑148 (MQ=255)                                                                                                                                   tttGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAg                   <  3:40353/147‑1 (MQ=255)                                                                                                                                      gCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAAc               <  2:128109/148‑1 (MQ=255)                                                                                                                                          cgcTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGAGCACCAACCTCCCCCCCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGACCGGCGCCAGCAACGCCgg          <  6:69604/149‑1 (MQ=255)                                                                                                                                               cATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCaa                                    >  4:47723/1‑118 (MQ=255)                                                                                                                                               cATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCaa                                    <  3:47723/118‑1 (MQ=255)                                                                                                                                                aTCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAACGCCGGCGCTg     >  1:6291/1‑148 (MQ=255)                                                                                                                                                 tCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAACGCCGGCGCTGCa   <  7:35216/149‑1 (MQ=255)                                                                                                                                                 tCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAACGCCGGCGCTGCa   >  1:249569/1‑149 (MQ=255)                                                                                                                                                 tCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAACGCCGGCGCTGCa   <  5:107210/149‑1 (MQ=255)                                                                                                                                                  ccAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAACGCCGGCGCTGCAt  >  8:117378/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CCCAGGACAACGACCCCGCCGAGCGCTGGCTGCGCGACCGCATCCTGCAGTTCATGGCCAGGCAGTGATGCCCTCTTCGCAGCACAACGCTGCGCCTATCGGTCGTACAGCCTGAAGCACGCGGCTGCTATTTGCCGCGCTGCATCCAGGCTGCGCCAAGCCCACTGAGGCAGATCACCAAAATCCCCACCAGGCTCAGGGTATCCGGCACCTGGCTGTACACCACGAAGCCAAGCAACCCGGCAAACACGATCTGGCAATAGCTGAACGGCGCCAGCAACGCCGGCGCTGCAT  >  NC_002947/4171117‑4171410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.